RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ANKRD22Q5VYY1 191 aa21.41■■□□□ 1.02
CLN3-207ENST00000395653 C11orf96Q7Z7L8 435 aa21.41■■□□□ 1.02
CLN3-207ENST00000395653 NAGSQ8N159 534 aa21.41■■□□□ 1.02
CLN3-207ENST00000395653 MCUQ8NE86 351 aa21.41■■□□□ 1.02
CLN3-207ENST00000395653 KLK13Q9UKR3 277 aa21.41■■□□□ 1.02
CLN3-207ENST00000395653 KCNK6Q9Y257 313 aa21.41■■□□□ 1.02
CLN3-207ENST00000395653 OPA1O60313 960 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 TMEM63AO94886 807 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 RALBP11234 206 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 MLNP12872 115 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 SPINK2P20155 84 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 INSM1Q01101 510 aaPredicted RBP21.4■■□□□ 1.02
CLN3-207ENST00000395653 PTK6Q13882 451 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 ZRANB3Q5FWF4 1079 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 ARMC3Q5W041 872 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 SYDE1Q6ZW31 735 aaPredicted RBP21.4■■□□□ 1.02
CLN3-207ENST00000395653 MAPK15Q8TD08 544 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 ZNF778Q96MU6 729 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 COPS8Q99627 209 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 FAM96AQ9H5X1 160 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 KLC4Q9NSK0 619 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 ZDHHC3Q9NYG2 299 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 TBC1D29Q9UFV1 150 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 SLC23A2Q9UGH3 650 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 SLC2A6Q9UGQ3 507 aa21.4■■□□□ 1.02
CLN3-207ENST00000395653 DNMT3AQ9Y6K1 912 aaPredicted RBP21.4■■□□□ 1.02
CLN3-207ENST00000395653 IGLV3-16A0A075B6K0 115 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 A6NCN8 305 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 PRR19A6NJB7 356 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 NUDT21O43809 227 aaKnown RBP21.39■■□□□ 1.02
CLN3-207ENST00000395653 KCNJ13O60928 360 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 PNLIPP16233 465 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 VCLP18206 1134 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 PTGIRP43119 386 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 CTSCP53634 463 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 PLA2G4EQ3MJ16 856 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 HES3Q5TGS1 186 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 TMEM220Q6QAJ8 160 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 SERPINA9Q86WD7 417 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 KLHL7Q8IXQ5 586 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 CACTIN-AS1Q8N1I8 211 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 ARL14Q8N4G2 192 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 NAT8LQ8N9F0 302 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 WDR48Q8TAF3 677 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 PATE1Q8WXA2 126 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 CCDC74AQ96AQ1 378 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 DCUN1D1Q96GG9 259 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 CCDC3Q9BQI4 270 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 ABCG4Q9H172 646 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 MRM3Q9HC36 420 aaKnown RBP21.39■■□□□ 1.02
CLN3-207ENST00000395653 XAB2Q9HCS7 855 aaKnown RBP21.39■■□□□ 1.02
CLN3-207ENST00000395653 CHRAC1Q9NRG0 131 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 ASIC3Q9UHC3 531 aa21.39■■□□□ 1.02
CLN3-207ENST00000395653 ARHGEF17Q96PE2 2063 aaPredicted RBP21.39■■□□□ 1.01
CLN3-207ENST00000395653 CCDC162PA2VCL2 907 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 OR2AG2A6NM03 316 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 CFAP99D6REC4 459 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 F3P13726 295 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 SLC2A4P14672 509 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 ACRV1P26436 265 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 MGAT1P26572 445 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 FOXN2P32314 431 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 MAZP56270 477 aaKnown RBP21.38■■□□□ 1.01
CLN3-207ENST00000395653 CRADDP78560 199 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 B4GALNT1Q00973 533 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 DR1Q01658 176 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 AFTPHQ6ULP2 937 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 TAS2R42Q7RTR8 314 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 CAND1Q86VP6 1230 aaKnown RBP21.38■■□□□ 1.01
CLN3-207ENST00000395653 PPIL6Q8IXY8 311 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 HDAC10Q969S8 669 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 SGSM3Q96HU1 749 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 C16orf45Q96MC5 204 aaPredicted RBP21.38■■□□□ 1.01
CLN3-207ENST00000395653 LRIT1Q9P2V4 623 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 MSRB2Q9Y3D2 182 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 RNF215Q9Y6U7 377 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 ZFC3H1O60293 1989 aaKnown RBP21.38■■□□□ 1.01
CLN3-207ENST00000395653 PTPRBP23467 1997 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 DNALI1O14645 258 aaPredicted RBP21.38■■□□□ 1.01
CLN3-207ENST00000395653 EML2O95834 649 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 CDKN1CP49918 316 aaPredicted RBP21.38■■□□□ 1.01
CLN3-207ENST00000395653 PRAMEP78395 509 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 DMPKQ09013 629 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 DHX34Q14147 1143 aaKnown RBP21.38■■□□□ 1.01
CLN3-207ENST00000395653 BCL7AQ4VC05 210 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 FNBP1LQ5T0N5 605 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 RNASEH2BQ5TBB1 312 aaKnown RBP21.38■■□□□ 1.01
CLN3-207ENST00000395653 CDCP2Q5VXM1 449 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 AMZ2Q86W34 360 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 PIANPQ8IYJ0 282 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 SFRP1Q8N474 314 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.38■■□□□ 1.01
CLN3-207ENST00000395653 TRIM44Q96DX7 344 aaPredicted RBP21.38■■□□□ 1.01
CLN3-207ENST00000395653 SGF29Q96ES7 293 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 SERPINB12Q96P63 405 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 KIFC1Q9BW19 673 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 OSGEPL1Q9H4B0 414 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 TREX1Q9NSU2 369 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 SYBUQ9NX95 663 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms