RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CLIP3Q96DZ5 547 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 SMARCD1Q96GM5 515 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CNDP1Q96KN2 507 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ADAM2Q99965 735 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 FTHL17Q9BXU8 183 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 ACTL8Q9H568 366 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CHRAC1Q9NRG0 131 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 HAUS2Q9NVX0 235 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 PIH1D1Q9NWS0 290 aaKnown RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 TMEM161AQ9NX61 479 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 MARCH4Q9P2E8 410 aaPredicted RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 FBXO10Q9UK96 956 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 INTS6Q9UL03 887 aaKnown RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 PHTF1Q9UMS5 762 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 INVSQ9Y283 1065 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 MTO1Q9Y2Z2 717 aaKnown RBP2.32□□□□□ -2.04
VPS54-202ENST00000354504 ATP23Q9Y6H3 246 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 CSMD1Q96PZ7 3565 aa2.32□□□□□ -2.04
VPS54-202ENST00000354504 MYOCOSA0A1B0GUC4 107 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ARHGEF37A1IGU5 675 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ERICH4A6NGS2 130 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 F8W8V4 182 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 H7C0S8 307 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 FBP2O00757 339 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ACOT8O14734 319 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 APOL1O14791 398 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 AREL1O15033 823 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 KCNN4O15554 427 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 HTRA2O43464 458 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 PRAMEF4O60810 478 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 IL33O95760 270 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TBX6O95947 436 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 SOD1P00441 154 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 POMCP01189 267 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 C1QCP02747 245 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 POU2F2P09086 479 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 NCAM1P13591 858 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 AOC1P19801 751 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 FPR1P21462 350 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 MGAT1P26572 445 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 AOAHP28039 575 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PTPN6P29350 595 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 HTR7P34969 479 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 GJC1P36383 396 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ADCY8P40145 1251 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 WASP42768 502 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TUBP50607 506 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 RAP1GDS1P52306 607 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 EPHB3P54753 998 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 YWHAGP61981 247 aaKnown RBP eCLIP2.31□□□□□ -2.04
VPS54-202ENST00000354504 DYNLT1P63172 113 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CDK16Q00536 496 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PPARDQ03181 441 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 DBPQ10586 325 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 KRT72Q14CN4 511 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 LRRC26Q2I0M4 334 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ANKRD20A4Q4UJ75 823 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PAN2Q504Q3 1202 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 DNAJC21Q5F1R6 531 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 PRAMEF9Q5VWM5 478 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 DENND2CQ68D51 928 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SLC39A5Q6ZMH5 540 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 DENND5BQ6ZUT9 1274 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 SLC24A5Q71RS6 500 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CATSPER4Q7RTX7 472 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TRPM8Q7Z2W7 1104 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PCGF5Q86SE9 256 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 FUNDC1Q8IVP5 155 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 C4orf33Q8N1A6 199 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 RTL3Q8N8U3 475 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 COLGALT1Q8NBJ5 622 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 OR52K1Q8NGK4 314 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 GSDMBQ8TAX9 411 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 MAIP1Q8WWC4 291 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ECHDC3Q96DC8 303 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CEP295NLQ96MC4 621 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TTC25Q96NG3 672 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 OMDQ99983 421 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 C19orf43Q9BQ61 176 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 GPATCH1Q9BRR8 931 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 TRIM4Q9C037 500 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 MIS12Q9H081 205 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 TKTL2Q9H0I9 626 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 ZBP1Q9H171 429 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 C1orf21Q9H246 121 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 GSTO2Q9H4Y5 243 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PPCSQ9HAB8 311 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 MLXIPLQ9NP71 852 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 FBXO6Q9NRD1 293 aaPredicted RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 MRPS18AQ9NVS2 196 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 COMMD8Q9NX08 183 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CLIC5Q9NZA1 410 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PAK5Q9P286 719 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 PRSS50Q9UI38 385 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 CDC42EP3Q9UKI2 254 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 RIMKLBQ9ULI2 386 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 HBS1LQ9Y450 684 aaKnown RBP2.31□□□□□ -2.04
VPS54-202ENST00000354504 IGLV3-16A0A075B6K0 115 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 A0A0D9SEW6 157 aa2.31□□□□□ -2.04
VPS54-202ENST00000354504 KLHL33A6NCF5 533 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms