RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 MCTS1Q9ULC4 181 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 SLC12A4Q9UP95 1085 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 PCDHGA8Q9Y5G5 932 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 TNPO3Q9Y5L0 923 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 COL16A1Q07092 1604 aaPredicted RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 CLOCKO15516 846 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 RAD1O60671 282 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 AGTP01019 485 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 FTH1P19P0C7X4 201 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 AUHQ13825 339 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 UBAP2LQ14157 1087 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 RFTN1Q14699 578 aaPredicted RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 SHROOM1Q2M3G4 852 aaPredicted RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 GAREM2Q75VX8 874 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM110Q86TL2 294 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 KRT73Q86Y46 540 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ALDH16A1Q8IZ83 802 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 METTL6Q8TCB7 284 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ANKRD49Q8WVL7 239 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF606Q8WXB4 792 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 TAAR9Q96RI9 348 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 MED18Q9BUE0 208 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 FRMD8Q9BZ67 464 aaPredicted RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 SAYSD1Q9NPB0 183 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ATAD3AQ9NVI7 634 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 DNMT3BQ9UBC3 853 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 EML1O00423 815 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 KCNJ13O60928 360 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 USP1O94782 785 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 FKBP9O95302 570 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 TSPAN12O95859 305 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 PAHP00439 452 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 EGFP01133 1207 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ITGA1P56199 1179 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 YPEL5P62699 121 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 TUBB2AQ13885 445 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 POU6F1Q14863 301 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 FAM92BQ6ZTR7 304 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 FKBP9P1Q75LS8 142 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 C2orf73Q8N5S3 287 aaPredicted RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 EMC1Q8N766 993 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 MFSD2AQ8NA29 543 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 DCAF4L2Q8NA75 395 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 OR9Q1Q8NGQ5 310 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF507Q8TCN5 953 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 SGF29Q96ES7 293 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 PBKQ96KB5 322 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 TUBB2BQ9BVA1 445 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 MRPL40Q9NQ50 206 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 QPCTLQ9NXS2 382 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 CAMK2AQ9UQM7 478 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 PCDHB14Q9Y5E9 798 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 PI15O43692 258 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 SIN3BO75182 1162 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 TCEA3O75764 348 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 HPCAL1P37235 193 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 SRP54P61011 504 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 ZXDCQ2QGD7 858 aaPredicted RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 POTEHQ6S545 545 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 C6orf120Q7Z4R8 191 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 VGLL2Q8N8G2 317 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 OR14L1PQ8NHC6 308 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 NTPCRQ9BSD7 190 aaKnown RBP8.33□□□□□ -1.08
HMGB1-203ENST00000341423 CARD9Q9H257 536 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 TMEM60Q9H2L4 133 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 CLMPQ9H6B4 373 aa8.33□□□□□ -1.08
HMGB1-203ENST00000341423 OR1F1O43749 312 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 GRIA4P48058 902 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 ZP2Q05996 745 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 KCNC3Q14003 757 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 DHX34Q14147 1143 aaKnown RBP8.32□□□□□ -1.08
HMGB1-203ENST00000341423 FRMD6Q96NE9 622 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 TRIM15Q9C019 465 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 RAD21L1Q9H4I0 556 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 FAM96AQ9H5X1 160 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 EMC9Q9Y3B6 208 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 SCRG1O75711 98 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 DCTN3O75935 186 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 ERBB2P04626 1255 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 KCNE1P15382 129 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 CD82P27701 267 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 GGCXP38435 758 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 EIF2DP41214 584 aaKnown RBP8.32□□□□□ -1.08
HMGB1-203ENST00000341423 ABHD18Q0P651 414 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 MTM1Q13496 603 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 EXOC3L2Q2M3D2 409 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 NANOS1Q8WY41 292 aaKnown RBP8.32□□□□□ -1.08
HMGB1-203ENST00000341423 SARAFQ96BY9 339 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 THOC3Q96J01 351 aaKnown RBP8.32□□□□□ -1.08
HMGB1-203ENST00000341423 PLEKHG4BQ96PX9 1271 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 ADAM19Q9H013 955 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 ZNF395Q9H8N7 513 aaPredicted RBP8.32□□□□□ -1.08
HMGB1-203ENST00000341423 PARVBQ9HBI1 364 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 RPS6KL1Q9Y6S9 549 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 FOXO6A8MYZ6 492 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 GSNP06396 782 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 TARSP26639 723 aaKnown RBP8.32□□□□□ -1.08
HMGB1-203ENST00000341423 CASP4P49662 377 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 CLCN7P51798 805 aa8.32□□□□□ -1.08
HMGB1-203ENST00000341423 MEF2AQ02078 507 aaPredicted RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms