RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 HERVK_113P63132 956 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 ZNF678Q5SXM1 525 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 CPNE9Q8IYJ1 553 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 KIF2BQ8N4N8 673 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 CPA6Q8N4T0 437 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 INPP5DQ92835 1189 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 NSL1Q96IY1 281 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 ERVK-6Q9BXR3 956 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 SLC40A1Q9NP59 571 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 ARHGEF3Q9NR81 526 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 PKD2L2Q9NZM6 624 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 DKK3Q9UBP4 350 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 LNPEPQ9UIQ6 1025 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 IKZF3Q9UKT9 509 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 SORCS3Q9UPU3 1222 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 DHRS7Q9Y394 339 aa14.12□□□□□ -0.15
C9orf3-202ENST00000297979 MUC22E2RYF6 1773 aaPredicted RBP14.12□□□□□ -0.15
C9orf3-202ENST00000297979 NPEPPSL1A6NEC2 478 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 SYCE1LA8MT33 242 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 CAPN14A8MX76 684 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 BTN3A1O00481 513 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 MTHFD2P13995 350 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 HNRNPLP14866 589 aaKnown RBP eCLIP14.11□□□□□ -0.153e-10■■■□□ 15.2
C9orf3-202ENST00000297979 NQO1P15559 274 aaKnown RBP14.11□□□□□ -0.15
C9orf3-202ENST00000297979 KCNJ2P63252 427 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 FCHO2Q0JRZ9 810 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 TSNQ15631 228 aaKnown RBP14.11□□□□□ -0.15
C9orf3-202ENST00000297979 TBCCQ15814 346 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 FNDC3BQ53EP0 1204 aaKnown RBP14.11□□□□□ -0.15
C9orf3-202ENST00000297979 RFLNAQ6ZTI6 216 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 RAB44Q7Z6P3 723 aaPredicted RBP14.11□□□□□ -0.15
C9orf3-202ENST00000297979 PTGR2Q8N8N7 351 aaPredicted RBP14.11□□□□□ -0.15
C9orf3-202ENST00000297979 MAPK15Q8TD08 544 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 HCAR2Q8TDS4 363 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 EEF1AKMT1Q8WVE0 214 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 PTCD3Q96EY7 689 aaKnown RBP14.11□□□□□ -0.15
C9orf3-202ENST00000297979 TRMOQ9BU70 441 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 GSTO2Q9H4Y5 243 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 PCDH12Q9NPG4 1184 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 LAMA3Q16787 3333 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 CCDC85CA6NKD9 419 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 SUPT3HB4E1H0 165 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 CDC7O00311 574 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 SUPT3HO75486 399 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 TIMP2P16035 220 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 XPAP23025 273 aaPredicted RBP14.11□□□□□ -0.15
C9orf3-202ENST00000297979 GALNT1Q10472 559 aaPredicted RBP14.11□□□□□ -0.15
C9orf3-202ENST00000297979 SLC9B1Q4ZJI4 515 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 SH2D4BQ5SQS7 431 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 KDM1BQ8NB78 822 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 ULK4Q96C45 1275 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 SLC7A6OSQ96CW6 309 aaPredicted RBP14.11□□□□□ -0.15
C9orf3-202ENST00000297979 CCDC106Q9BWC9 280 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 GTSE1Q9NYZ3 720 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 CDH23Q9H251 3354 aa14.11□□□□□ -0.15
C9orf3-202ENST00000297979 GRID2O43424 1007 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 GFAPP14136 432 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 CALB2P22676 271 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 ATAT1Q5SQI0 421 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 MACC1Q6ZN28 852 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 YAF2Q8IY57 180 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 STON2Q8WXE9 905 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 FUBP1Q96AE4 644 aaKnown RBP14.1□□□□□ -0.15
C9orf3-202ENST00000297979 PRSS21Q9Y6M0 314 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 RANBP2P49792 3224 aaKnown RBP14.1□□□□□ -0.15
C9orf3-202ENST00000297979 PLXNB3Q9ULL4 1909 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 ECI2O75521 394 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 SUPT7LO94864 414 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 RUNX3Q13761 415 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 PFKFB4Q16877 469 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 ATP13A5Q4VNC0 1218 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 UNC50Q53HI1 259 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 RPS27LQ71UM5 84 aaKnown RBP14.1□□□□□ -0.15
C9orf3-202ENST00000297979 CUZD1Q86UP6 607 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 PHTF2Q8N3S3 785 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 CLDN19Q8N6F1 224 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 TERB1Q8NA31 727 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 ZDHHC3Q9NYG2 299 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 CEP290O15078 2479 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 DOCK8Q8NF50 2099 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 C16orf96A6NNT2 1141 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.1□□□□□ -0.15
C9orf3-202ENST00000297979 NSG1P42857 185 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 UBAP2LQ14157 1087 aaKnown RBP14.1□□□□□ -0.15
C9orf3-202ENST00000297979 GRM2Q14416 872 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 POM121L1PQ3SYA9 428 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 CES5AQ6NT32 575 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 TREML1Q86YW5 311 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 FBXO39Q8N4B4 442 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 AFAP1L2Q8N4X5 818 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 LKAAEAR1Q8TD35 194 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 PDLIM5Q96HC4 596 aaKnown RBP14.1□□□□□ -0.15
C9orf3-202ENST00000297979 MYADMQ96S97 322 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 COPS8Q99627 209 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 NUF2Q9BZD4 464 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 SLC7A5P2Q9GIP4 190 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 TCF7L2Q9NQB0 619 aa14.1□□□□□ -0.15
C9orf3-202ENST00000297979 EDDM13A0A1B0GTR0 161 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 PRNPP04156 253 aa14.09□□□□□ -0.15
C9orf3-202ENST00000297979 ESRRAP11474 423 aaPredicted RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms