RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 P2RY2P41231 377 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 CDK18Q07002 472 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 PDAP1Q13442 181 aaKnown RBP8.6□□□□□ -1.03
VPS4B-201ENST00000238497 UGP2Q16851 508 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 FSCBQ5H9T9 825 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 STEAP4Q687X5 459 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 TMEM215Q68D42 235 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 KCTD11Q693B1 232 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 KLC3Q6P597 504 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 SCUBE1Q8IWY4 988 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 DDIASQ8IXT1 998 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 SCML4Q8N228 414 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 WFIKKN2Q8TEU8 576 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 TOE1Q96GM8 510 aaKnown RBP8.6□□□□□ -1.03
VPS4B-201ENST00000238497 HBEGFQ99075 208 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 POLR1EQ9GZS1 481 aaKnown RBP8.6□□□□□ -1.03
VPS4B-201ENST00000238497 FSCN3Q9NQT6 498 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 VPS45Q9NRW7 570 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 ZDHHC2Q9UIJ5 367 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 FCF1Q9Y324 198 aaKnown RBP8.6□□□□□ -1.03
VPS4B-201ENST00000238497 PCDHB9Q9Y5E1 797 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 HEATR9A2RTY3 570 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 PSMD3O43242 534 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 ZNF217O75362 1048 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 NDUFS3O75489 264 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 LUC7L3O95232 432 aaKnown RBP8.6□□□□□ -1.03
VPS4B-201ENST00000238497 SIX3O95343 332 aaPredicted RBP8.6□□□□□ -1.03
VPS4B-201ENST00000238497 JUNP05412 331 aaKnown RBP8.6□□□□□ -1.03
VPS4B-201ENST00000238497 CCND1P24385 295 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 HADHAP40939 763 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 RGRP47804 291 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 CDKN1CP49918 316 aaPredicted RBP8.6□□□□□ -1.03
VPS4B-201ENST00000238497 HNRNPDQ14103 355 aaKnown RBP8.6□□□□□ -1.03
VPS4B-201ENST00000238497 SEL1L3Q68CR1 1132 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 PMS2CLQ68D20 193 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 DENND5AQ6IQ26 1287 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 ASRGL1Q7L266 308 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 C11orf74Q86VG3 221 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 PRICKLE1Q96MT3 831 aaPredicted RBP8.6□□□□□ -1.03
VPS4B-201ENST00000238497 C7orf26Q96N11 449 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 SLC25A51Q9H1U9 297 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 GIMAP2Q9UG22 337 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 TAGLN3Q9UI15 199 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 WASF2Q9Y6W5 498 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 CACNA1GO43497 2377 aa8.6□□□□□ -1.03
VPS4B-201ENST00000238497 C4orf47A7E2U8 309 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 IQCF5A8MTL0 148 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 K7ERQ8 282 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 DLX3O60479 287 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 DNTTP04053 509 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 SLC35E2BP0CK96 405 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 GRK2P25098 689 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 COPAP53621 1224 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 PFKFB4Q16877 469 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 FAM83EQ2M2I3 478 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 MAP7D1Q3KQU3 841 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 CCDC153Q494R4 210 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 ACSBG2Q5FVE4 666 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 LRRC8EQ6NSJ5 796 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 SNX32Q86XE0 403 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 ARHGAP24Q8N264 748 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 PGBD5Q8N414 524 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 FAM156AQ8NDB6 213 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 LENG8Q96PV6 779 aaPredicted RBP8.59□□□□□ -1.03
VPS4B-201ENST00000238497 IL12RB2Q99665 862 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 OLFM1Q99784 485 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 NUSAP1Q9BXS6 441 aaKnown RBP8.59□□□□□ -1.03
VPS4B-201ENST00000238497 SCUBE2Q9NQ36 999 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 ADA2Q9NZK5 511 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 NCKIPSDQ9NZQ3 722 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 KIAA1522Q9P206 1035 aaPredicted RBP8.59□□□□□ -1.03
VPS4B-201ENST00000238497 UBA2Q9UBT2 640 aaPredicted RBP8.59□□□□□ -1.03
VPS4B-201ENST00000238497 SLCO3A1Q9UIG8 710 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 HELZP42694 1942 aaKnown RBP8.59□□□□□ -1.03
VPS4B-201ENST00000238497 COL4A2P08572 1712 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 DNAH14Q0VDD8 3507 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 RNASEH1O60930 286 aaKnown RBP8.59□□□□□ -1.03
VPS4B-201ENST00000238497 SRP72O76094 671 aaKnown RBP8.59□□□□□ -1.03
VPS4B-201ENST00000238497 EPN2O95208 641 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 LATS1O95835 1130 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 GOT2P00505 430 aaKnown RBP8.59□□□□□ -1.03
VPS4B-201ENST00000238497 MPOP05164 745 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 CTSOP43234 321 aaPredicted RBP8.59□□□□□ -1.03
VPS4B-201ENST00000238497 STK19P49842 368 aaPredicted RBP8.59□□□□□ -1.03
VPS4B-201ENST00000238497 GNA12Q03113 381 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 ART3Q13508 389 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 TSTD2Q5T7W7 516 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 GLT6D1Q7Z4J2 308 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 HPS6Q86YV9 775 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 ACMSDQ8TDX5 336 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 ANKRD49Q8WVL7 239 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 SKA1Q96BD8 255 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 SLC39A13Q96H72 371 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 TNKS2Q9H2K2 1166 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 SAR1AQ9NR31 198 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 CCDC167Q9P0B6 97 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 FBXO10Q9UK96 956 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 VWA7Q9Y334 891 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 AK5Q9Y6K8 562 aa8.59□□□□□ -1.03
VPS4B-201ENST00000238497 CCDC162PA2VCL2 907 aa8.59□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms