RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 CHL1O00533 1208 aa24.89■■□□□ 1.57
SYNGAP1-227ENST00000638142 PTPRCP08575 1304 aa24.88■■□□□ 1.57
SYNGAP1-227ENST00000638142 EIF4A2Q14240 407 aaKnown RBP24.87■■□□□ 1.57
SYNGAP1-227ENST00000638142 SULT6B1Q6IMI4 303 aa24.87■■□□□ 1.57
SYNGAP1-227ENST00000638142 CEP85Q6P2H3 762 aa24.87■■□□□ 1.57
SYNGAP1-227ENST00000638142 SSFA2P28290 1259 aa24.86■■□□□ 1.57
SYNGAP1-227ENST00000638142 FAM69CQ0P6D2 419 aa24.86■■□□□ 1.57
SYNGAP1-227ENST00000638142 AEBP1Q8IUX7 1158 aa24.86■■□□□ 1.57
SYNGAP1-227ENST00000638142 DIP2BQ9P265 1576 aa24.85■■□□□ 1.57
SYNGAP1-227ENST00000638142 HDGFP51858 240 aaKnown RBP24.85■■□□□ 1.57
SYNGAP1-227ENST00000638142 USP26Q9BXU7 913 aa24.85■■□□□ 1.57
SYNGAP1-227ENST00000638142 PRR36Q9H6K5 1346 aa24.85■■□□□ 1.57
SYNGAP1-227ENST00000638142 RTL1A6NKG5 1358 aa24.84■■□□□ 1.57
SYNGAP1-227ENST00000638142 CASC1Q6TDU7 716 aa24.84■■□□□ 1.57
SYNGAP1-227ENST00000638142 GAS2L3Q86XJ1 694 aa24.84■■□□□ 1.57
SYNGAP1-227ENST00000638142 MSH6P52701 1360 aa24.83■■□□□ 1.57
SYNGAP1-227ENST00000638142 C16orf71Q8IYS4 520 aaPredicted RBP24.83■■□□□ 1.57
SYNGAP1-227ENST00000638142 OVOS2A0A0J9YW53 1432 aa24.82■■□□□ 1.56
SYNGAP1-227ENST00000638142 OVOS2Q6IE36 1432 aa24.82■■□□□ 1.56
SYNGAP1-227ENST00000638142 IBTKQ9P2D0 1353 aaPredicted RBP24.82■■□□□ 1.56
SYNGAP1-227ENST00000638142 TTC21BQ7Z4L5 1316 aa24.82■■□□□ 1.56
SYNGAP1-227ENST00000638142 KRT24Q2M2I5 525 aa24.81■■□□□ 1.56
SYNGAP1-227ENST00000638142 BAG4O95429 457 aaKnown RBP24.81■■□□□ 1.56
SYNGAP1-227ENST00000638142 NUCB2P80303 420 aa24.81■■□□□ 1.56
SYNGAP1-227ENST00000638142 KLHL40Q2TBA0 621 aa24.81■■□□□ 1.56
SYNGAP1-227ENST00000638142 SDSP20132 328 aa24.8■■□□□ 1.56
SYNGAP1-227ENST00000638142 MCM10Q7L590 875 aa24.8■■□□□ 1.56
SYNGAP1-227ENST00000638142 RGPD1P0DJD0 1748 aa24.8■■□□□ 1.56
SYNGAP1-227ENST00000638142 MLECQ14165 292 aa24.79■■□□□ 1.56
SYNGAP1-227ENST00000638142 OTUD7AQ8TE49 926 aaPredicted RBP24.79■■□□□ 1.56
SYNGAP1-227ENST00000638142 NAP1L5Q96NT1 182 aaPredicted RBP24.79■■□□□ 1.56
SYNGAP1-227ENST00000638142 CRB1P82279 1406 aa24.78■■□□□ 1.56
SYNGAP1-227ENST00000638142 MEIS3Q99687 375 aa24.78■■□□□ 1.56
SYNGAP1-227ENST00000638142 NALCNQ8IZF0 1738 aa24.78■■□□□ 1.56
SYNGAP1-227ENST00000638142 ESPNB1AK53 854 aa24.77■■□□□ 1.56
SYNGAP1-227ENST00000638142 HMMRO75330 724 aa24.77■■□□□ 1.56
SYNGAP1-227ENST00000638142 TSPOAP1O95153 1857 aa24.77■■□□□ 1.56
SYNGAP1-227ENST00000638142 TOPAZ1Q8N9V7 1692 aa24.77■■□□□ 1.56
SYNGAP1-227ENST00000638142 TRIM44Q96DX7 344 aaPredicted RBP24.77■■□□□ 1.56
SYNGAP1-227ENST00000638142 CWC22Q9HCG8 908 aaKnown RBP24.77■■□□□ 1.56
SYNGAP1-227ENST00000638142 REC8O95072 547 aa24.76■■□□□ 1.55
SYNGAP1-227ENST00000638142 ST18O60284 1047 aa24.76■■□□□ 1.55
SYNGAP1-227ENST00000638142 CYP2E1P05181 493 aaPredicted RBP24.76■■□□□ 1.55
SYNGAP1-227ENST00000638142 DDX49Q9Y6V7 483 aaKnown RBP24.76■■□□□ 1.55
SYNGAP1-227ENST00000638142 ROBO2Q9HCK4 1378 aa24.75■■□□□ 1.55
SYNGAP1-227ENST00000638142 PEAK1Q9H792 1746 aa24.75■■□□□ 1.55
SYNGAP1-227ENST00000638142 PLEKHG3A1L390 1219 aa24.75■■□□□ 1.55
SYNGAP1-227ENST00000638142 USP31Q70CQ4 1352 aa24.75■■□□□ 1.55
SYNGAP1-227ENST00000638142 ACEP12821 1306 aa24.75■■□□□ 1.55
SYNGAP1-227ENST00000638142 SMARCA5O60264 1052 aaPredicted RBP24.74■■□□□ 1.55
SYNGAP1-227ENST00000638142 SLC4A2P04920 1241 aa24.74■■□□□ 1.55
SYNGAP1-227ENST00000638142 USP6P35125 1406 aa24.74■■□□□ 1.55
SYNGAP1-227ENST00000638142 ARHGEF10O15013 1369 aa24.73■■□□□ 1.55
SYNGAP1-227ENST00000638142 HSP90AB2PQ58FF8 381 aa24.73■■□□□ 1.55
SYNGAP1-227ENST00000638142 OSBPL3Q9H4L5 887 aa24.73■■□□□ 1.55
SYNGAP1-227ENST00000638142 ESF1Q9H501 851 aaKnown RBP24.73■■□□□ 1.55
SYNGAP1-227ENST00000638142 CCT4P50991 539 aaKnown RBP24.72■■□□□ 1.55
SYNGAP1-227ENST00000638142 TMEM2Q9UHN6 1383 aa24.72■■□□□ 1.55
SYNGAP1-227ENST00000638142 ERC2O15083 957 aa24.71■■□□□ 1.55
SYNGAP1-227ENST00000638142 APBB1O00213 710 aa24.71■■□□□ 1.55
SYNGAP1-227ENST00000638142 CCDC173Q0VFZ6 552 aa24.71■■□□□ 1.55
SYNGAP1-227ENST00000638142 ERBB4Q15303 1308 aa24.71■■□□□ 1.55
SYNGAP1-227ENST00000638142 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.7■■□□□ 1.55
SYNGAP1-227ENST00000638142 TNRQ92752 1358 aa24.7■■□□□ 1.54
SYNGAP1-227ENST00000638142 ADAMTS13Q76LX8 1427 aa24.69■■□□□ 1.54
SYNGAP1-227ENST00000638142 NASPP49321 788 aaPredicted RBP24.69■■□□□ 1.54
SYNGAP1-227ENST00000638142 MCTP1Q6DN14 999 aa24.69■■□□□ 1.54
SYNGAP1-227ENST00000638142 AK9Q5TCS8 1911 aa24.69■■□□□ 1.54
SYNGAP1-227ENST00000638142 ZNF445P59923 1031 aa24.69■■□□□ 1.54
SYNGAP1-227ENST00000638142 PPP1R9BQ96SB3 815 aa24.69■■□□□ 1.54
SYNGAP1-227ENST00000638142 RTF1Q92541 710 aaKnown RBP24.68■■□□□ 1.54
SYNGAP1-227ENST00000638142 PDE1AP54750 535 aa24.68■■□□□ 1.54
SYNGAP1-227ENST00000638142 TSPYL4Q9UJ04 414 aa24.68■■□□□ 1.54
SYNGAP1-227ENST00000638142 ANP32BQ92688 251 aaKnown RBP24.67■■□□□ 1.54
SYNGAP1-227ENST00000638142 UBR1Q8IWV7 1749 aa24.67■■□□□ 1.54
SYNGAP1-227ENST00000638142 MAP3K19Q56UN5 1328 aa24.67■■□□□ 1.54
SYNGAP1-227ENST00000638142 LMBRD1Q9NUN5 540 aa24.67■■□□□ 1.54
SYNGAP1-227ENST00000638142 SSH2Q76I76 1423 aa24.66■■□□□ 1.54
SYNGAP1-227ENST00000638142 KDRP35968 1356 aa24.65■■□□□ 1.54
SYNGAP1-227ENST00000638142 FMN2Q9NZ56 1722 aa24.65■■□□□ 1.54
SYNGAP1-227ENST00000638142 GNAI2P04899 355 aa24.64■■□□□ 1.54
SYNGAP1-227ENST00000638142 MTHFSDQ2M296 383 aaKnown RBP24.64■■□□□ 1.54
SYNGAP1-227ENST00000638142 SLC4A10Q6U841 1118 aa24.64■■□□□ 1.54
SYNGAP1-227ENST00000638142 G2E3Q7L622 706 aa24.64■■□□□ 1.54
SYNGAP1-227ENST00000638142 TTC21AQ8NDW8 1320 aa24.64■■□□□ 1.54
SYNGAP1-227ENST00000638142 PKP1Q13835 747 aa24.64■■□□□ 1.53
SYNGAP1-227ENST00000638142 MIS18AQ9NYP9 233 aa24.64■■□□□ 1.53
SYNGAP1-227ENST00000638142 FLT4P35916 1363 aa24.63■■□□□ 1.53
SYNGAP1-227ENST00000638142 SBNO1A3KN83 1393 aa24.63■■□□□ 1.53
SYNGAP1-227ENST00000638142 F6X3S4 739 aa24.63■■□□□ 1.53
SYNGAP1-227ENST00000638142 ZGPATQ8N5A5 531 aaKnown RBP24.63■■□□□ 1.53
SYNGAP1-227ENST00000638142 RRP9O43818 475 aaKnown RBP24.62■■□□□ 1.53
SYNGAP1-227ENST00000638142 FOXO3O43524 673 aa24.62■■□□□ 1.53
SYNGAP1-227ENST00000638142 PLEKHG1Q9ULL1 1385 aa24.62■■□□□ 1.53
SYNGAP1-227ENST00000638142 CAVIN1Q6NZI2 390 aaKnown RBP24.61■■□□□ 1.53
SYNGAP1-227ENST00000638142 STK31Q9BXU1 1019 aa24.61■■□□□ 1.53
SYNGAP1-227ENST00000638142 SALL3Q9BXA9 1300 aa24.61■■□□□ 1.53
SYNGAP1-227ENST00000638142 ZSCAN23Q3MJ62 389 aa24.61■■□□□ 1.53
SYNGAP1-227ENST00000638142 MCM2P49736 904 aa24.6■■□□□ 1.53
SYNGAP1-227ENST00000638142 GLIPR1L2Q4G1C9 344 aa24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms