RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 MRE11P49959 708 aa13.54□□□□□ -0.24
VPS4B-206ENST00000591475 FOXO3O43524 673 aa13.54□□□□□ -0.24
VPS4B-206ENST00000591475 BMP2KLQ5H9B9 411 aa13.54□□□□□ -0.24
VPS4B-206ENST00000591475 ISY1Q9ULR0 285 aaKnown RBP13.54□□□□□ -0.24
VPS4B-206ENST00000591475 CIZ1Q9ULV3 898 aaPredicted RBP13.54□□□□□ -0.24
VPS4B-206ENST00000591475 SLAIN2Q9P270 581 aa13.53□□□□□ -0.24
VPS4B-206ENST00000591475 HSP90AB1P08238 724 aaKnown RBP13.52□□□□□ -0.24
VPS4B-206ENST00000591475 GCC1Q96CN9 775 aa13.52□□□□□ -0.24
VPS4B-206ENST00000591475 LTBP4Q8N2S1 1624 aa13.52□□□□□ -0.24
VPS4B-206ENST00000591475 KIF1AQ12756 1690 aa13.52□□□□□ -0.25
VPS4B-206ENST00000591475 PANK2Q9BZ23 570 aa13.52□□□□□ -0.25
VPS4B-206ENST00000591475 MAP2P11137 1827 aaKnown RBP13.52□□□□□ -0.25
VPS4B-206ENST00000591475 PTMSP20962 102 aa13.51□□□□□ -0.25
VPS4B-206ENST00000591475 CALD1Q05682 793 aaKnown RBP13.51□□□□□ -0.25
VPS4B-206ENST00000591475 ABTB2Q8N961 1025 aa13.51□□□□□ -0.25
VPS4B-206ENST00000591475 ARHGAP45Q92619 1136 aa13.51□□□□□ -0.25
VPS4B-206ENST00000591475 GBP4Q96PP9 640 aa13.51□□□□□ -0.25
VPS4B-206ENST00000591475 ZRANB1Q9UGI0 708 aa13.51□□□□□ -0.25
VPS4B-206ENST00000591475 USP31Q70CQ4 1352 aa13.5□□□□□ -0.25
VPS4B-206ENST00000591475 OVOS2A0A0J9YW53 1432 aa13.5□□□□□ -0.25
VPS4B-206ENST00000591475 OVOS2Q6IE36 1432 aa13.5□□□□□ -0.25
VPS4B-206ENST00000591475 ZBTB7BO15156 539 aaPredicted RBP13.5□□□□□ -0.25
VPS4B-206ENST00000591475 PRKAR2BP31323 418 aa13.5□□□□□ -0.25
VPS4B-206ENST00000591475 ANKRD45Q5TZF3 282 aa13.5□□□□□ -0.25
VPS4B-206ENST00000591475 GRPEL1Q9HAV7 217 aa13.5□□□□□ -0.25
VPS4B-206ENST00000591475 NPHP3Q7Z494 1330 aa13.5□□□□□ -0.25
VPS4B-206ENST00000591475 AATKQ6ZMQ8 1374 aa13.5□□□□□ -0.25
VPS4B-206ENST00000591475 NLRP6P59044 892 aa13.49□□□□□ -0.25
VPS4B-206ENST00000591475 BRINP3Q76B58 766 aa13.49□□□□□ -0.25
VPS4B-206ENST00000591475 KRT28Q7Z3Y7 464 aa13.49□□□□□ -0.25
VPS4B-206ENST00000591475 MRPL50Q8N5N7 158 aaKnown RBP13.49□□□□□ -0.25
VPS4B-206ENST00000591475 TNPO1Q92973 898 aaKnown RBP13.49□□□□□ -0.25
VPS4B-206ENST00000591475 CLCN1P35523 988 aa13.49□□□□□ -0.25
VPS4B-206ENST00000591475 NFE2L2Q16236 605 aa13.49□□□□□ -0.25
VPS4B-206ENST00000591475 SKOR2Q2VWA4 1001 aaPredicted RBP13.49□□□□□ -0.25
VPS4B-206ENST00000591475 RAB3GAP1Q15042 981 aa13.48□□□□□ -0.25
VPS4B-206ENST00000591475 DLG5Q8TDM6 1919 aa13.48□□□□□ -0.25
VPS4B-206ENST00000591475 VAMP4O75379 141 aa13.47□□□□□ -0.25
VPS4B-206ENST00000591475 GNAI1P63096 354 aa13.47□□□□□ -0.25
VPS4B-206ENST00000591475 KIF2CQ99661 725 aa13.47□□□□□ -0.25
VPS4B-206ENST00000591475 HSP90AA1P07900 732 aaKnown RBP13.47□□□□□ -0.25
VPS4B-206ENST00000591475 XPCQ01831 940 aaPredicted RBP13.47□□□□□ -0.25
VPS4B-206ENST00000591475 IFT57Q9NWB7 429 aa13.47□□□□□ -0.25
VPS4B-206ENST00000591475 POLKQ9UBT6 870 aa13.47□□□□□ -0.25
VPS4B-206ENST00000591475 PIK3C2AO00443 1686 aa13.46□□□□□ -0.25
VPS4B-206ENST00000591475 TBC1D9Q6ZT07 1266 aa13.46□□□□□ -0.25
VPS4B-206ENST00000591475 ABCC4O15439 1325 aa13.46□□□□□ -0.26
VPS4B-206ENST00000591475 K7ELQ4 463 aaPredicted RBP13.46□□□□□ -0.26
VPS4B-206ENST00000591475 C1orf115Q9H7X2 142 aa13.46□□□□□ -0.26
VPS4B-206ENST00000591475 FBLN1P23142 703 aa13.45□□□□□ -0.26
VPS4B-206ENST00000591475 SBNO1A3KN83 1393 aa13.45□□□□□ -0.26
VPS4B-206ENST00000591475 CDC45O75419 566 aa13.44□□□□□ -0.26
VPS4B-206ENST00000591475 NUTM2GQ5VZR2 741 aa13.44□□□□□ -0.26
VPS4B-206ENST00000591475 UBE2Q2Q8WVN8 375 aa13.44□□□□□ -0.26
VPS4B-206ENST00000591475 HMOX1P09601 288 aa13.44□□□□□ -0.26
VPS4B-206ENST00000591475 RRS1Q15050 365 aaKnown RBP13.44□□□□□ -0.26
VPS4B-206ENST00000591475 DDX17Q92841 729 aaKnown RBP13.44□□□□□ -0.26
VPS4B-206ENST00000591475 PHACTR3Q96KR7 559 aa13.44□□□□□ -0.26
VPS4B-206ENST00000591475 CFAP44Q96MT7 982 aa13.44□□□□□ -0.26
VPS4B-206ENST00000591475 API5Q9BZZ5 524 aaKnown RBP13.44□□□□□ -0.26
VPS4B-206ENST00000591475 EMILIN1Q9Y6C2 1016 aa13.44□□□□□ -0.26
VPS4B-206ENST00000591475 ZNF853P0CG23 659 aa13.43□□□□□ -0.26
VPS4B-206ENST00000591475 LMOD2Q6P5Q4 547 aa13.43□□□□□ -0.26
VPS4B-206ENST00000591475 SIRT2Q8IXJ6 389 aa13.43□□□□□ -0.26
VPS4B-206ENST00000591475 TSPYL6Q8N831 410 aa13.43□□□□□ -0.26
VPS4B-206ENST00000591475 KCNH5Q8NCM2 988 aa13.43□□□□□ -0.26
VPS4B-206ENST00000591475 THUMPD2Q9BTF0 503 aaKnown RBP13.43□□□□□ -0.26
VPS4B-206ENST00000591475 KIF24Q5T7B8 1368 aa13.43□□□□□ -0.26
VPS4B-206ENST00000591475 CDK12Q9NYV4 1490 aaPredicted RBP13.43□□□□□ -0.26
VPS4B-206ENST00000591475 USP54Q70EL1 1684 aa13.42□□□□□ -0.26
VPS4B-206ENST00000591475 LMOD3Q0VAK6 560 aa13.42□□□□□ -0.26
VPS4B-206ENST00000591475 NAP1L5Q96NT1 182 aaPredicted RBP13.42□□□□□ -0.26
VPS4B-206ENST00000591475 MBIPQ9NS73 344 aa13.42□□□□□ -0.26
VPS4B-206ENST00000591475 TRPM3Q9HCF6 1732 aaPredicted RBP13.42□□□□□ -0.26
VPS4B-206ENST00000591475 PXDNQ92626 1479 aa13.42□□□□□ -0.26
VPS4B-206ENST00000591475 GOLGA6L22H0YM25 854 aa13.42□□□□□ -0.26
VPS4B-206ENST00000591475 SOX12O15370 315 aa13.42□□□□□ -0.26
VPS4B-206ENST00000591475 CD2BP2O95400 341 aaKnown RBP13.42□□□□□ -0.26
VPS4B-206ENST00000591475 TWISTNBQ3B726 338 aaPredicted RBP13.42□□□□□ -0.26
VPS4B-206ENST00000591475 SOS2Q07890 1332 aaPredicted RBP13.41□□□□□ -0.26
VPS4B-206ENST00000591475 FOXD4L1Q9NU39 408 aa13.41□□□□□ -0.26
VPS4B-206ENST00000591475 SPATA31A3Q5VYP0 1347 aa13.41□□□□□ -0.26
VPS4B-206ENST00000591475 ESPNB1AK53 854 aa13.4□□□□□ -0.26
VPS4B-206ENST00000591475 TOM1O60784 492 aa13.4□□□□□ -0.26
VPS4B-206ENST00000591475 IL13P35225 146 aa13.4□□□□□ -0.26
VPS4B-206ENST00000591475 TRIM44Q96DX7 344 aaPredicted RBP13.4□□□□□ -0.26
VPS4B-206ENST00000591475 TNS3Q68CZ2 1445 aa13.4□□□□□ -0.26
VPS4B-206ENST00000591475 ARHGEF10O15013 1369 aa13.4□□□□□ -0.26
VPS4B-206ENST00000591475 ELL2O00472 640 aaPredicted RBP13.4□□□□□ -0.26
VPS4B-206ENST00000591475 CLEC17AQ6ZS10 378 aa13.4□□□□□ -0.26
VPS4B-206ENST00000591475 GAS2L2Q8NHY3 880 aa13.4□□□□□ -0.26
VPS4B-206ENST00000591475 RBM42Q9BTD8 480 aaKnown RBP13.4□□□□□ -0.26
VPS4B-206ENST00000591475 MAP3K19Q56UN5 1328 aa13.4□□□□□ -0.26
VPS4B-206ENST00000591475 GCP02774 474 aa13.39□□□□□ -0.27
VPS4B-206ENST00000591475 GAS2L3Q86XJ1 694 aa13.39□□□□□ -0.27
VPS4B-206ENST00000591475 AK9Q5TCS8 1911 aa13.39□□□□□ -0.27
VPS4B-206ENST00000591475 ALS2Q96Q42 1657 aa13.39□□□□□ -0.27
VPS4B-206ENST00000591475 SSFA2P28290 1259 aa13.39□□□□□ -0.27
VPS4B-206ENST00000591475 RABEP1Q15276 862 aa13.39□□□□□ -0.27
VPS4B-206ENST00000591475 C8orf58Q8NAV2 365 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms