RNA–Protein interactions for RNA: ENST00000583708.5

UBBP4-201, Transcript of ubiquitin B pseudogene 4, humanhuman

BASIC

Gene UBBP4, Length 689 nt, Biotype transcribed unprocessed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP4-201ENST00000583708 RGPD5Q99666 1765 aa12.37□□□□□ -0.43
UBBP4-201ENST00000583708 GAS2L2Q8NHY3 880 aa12.36□□□□□ -0.43
UBBP4-201ENST00000583708 RSPH6AQ9H0K4 717 aa12.36□□□□□ -0.43
UBBP4-201ENST00000583708 OVOS2A0A0G2JMS6 1433 aa12.36□□□□□ -0.43
UBBP4-201ENST00000583708 GLI3P10071 1580 aa12.35□□□□□ -0.43
UBBP4-201ENST00000583708 HTATSF1O43719 755 aaKnown RBP12.35□□□□□ -0.43
UBBP4-201ENST00000583708 BCL9O00512 1426 aa12.35□□□□□ -0.43
UBBP4-201ENST00000583708 PCDH11XQ9BZA7 1347 aa12.35□□□□□ -0.43
UBBP4-201ENST00000583708 PCDH11YQ9BZA8 1340 aa12.35□□□□□ -0.43
UBBP4-201ENST00000583708 RGPD1P0DJD0 1748 aa12.34□□□□□ -0.43
UBBP4-201ENST00000583708 A0A0G2JS52 829 aa12.34□□□□□ -0.43
UBBP4-201ENST00000583708 MYT1Q01538 1121 aa12.34□□□□□ -0.43
UBBP4-201ENST00000583708 NKX1-1Q15270 411 aaPredicted RBP12.34□□□□□ -0.43
UBBP4-201ENST00000583708 KRT27Q7Z3Y8 459 aa12.34□□□□□ -0.43
UBBP4-201ENST00000583708 IFNL2Q8IZJ0 200 aa12.34□□□□□ -0.43
UBBP4-201ENST00000583708 USHBP1Q8N6Y0 703 aa12.34□□□□□ -0.43
UBBP4-201ENST00000583708 RUNDC1Q96C34 613 aa12.34□□□□□ -0.43
UBBP4-201ENST00000583708 ADAMTS8Q9UP79 889 aa12.34□□□□□ -0.43
UBBP4-201ENST00000583708 HMOX1P09601 288 aa12.33□□□□□ -0.44
UBBP4-201ENST00000583708 FAM196AQ6ZSG2 479 aa12.33□□□□□ -0.44
UBBP4-201ENST00000583708 AEBP1Q8IUX7 1158 aa12.33□□□□□ -0.44
UBBP4-201ENST00000583708 MIER1Q8N108 512 aa12.33□□□□□ -0.44
UBBP4-201ENST00000583708 TNS2Q63HR2 1409 aa12.33□□□□□ -0.44
UBBP4-201ENST00000583708 MAPK8IP3Q9UPT6 1336 aa12.33□□□□□ -0.44
UBBP4-201ENST00000583708 HMGB2P26583 209 aaKnown RBP12.32□□□□□ -0.44
UBBP4-201ENST00000583708 PRKAR2BP31323 418 aa12.32□□□□□ -0.44
UBBP4-201ENST00000583708 AKAP4Q5JQC9 854 aa12.32□□□□□ -0.44
UBBP4-201ENST00000583708 C1orf141Q5JVX7 400 aa12.32□□□□□ -0.44
UBBP4-201ENST00000583708 PLEKHF1Q96S99 279 aa12.32□□□□□ -0.44
UBBP4-201ENST00000583708 THSD7AQ9UPZ6 1657 aa12.32□□□□□ -0.44
UBBP4-201ENST00000583708 LMOD3Q0VAK6 560 aa12.31□□□□□ -0.44
UBBP4-201ENST00000583708 CCDC125Q86Z20 511 aa12.31□□□□□ -0.44
UBBP4-201ENST00000583708 DCAF5Q96JK2 942 aa12.31□□□□□ -0.44
UBBP4-201ENST00000583708 MEGF6O75095 1541 aa12.31□□□□□ -0.44
UBBP4-201ENST00000583708 PARP4Q9UKK3 1724 aaKnown RBP12.31□□□□□ -0.44
UBBP4-201ENST00000583708 ERVV-2B6SEH9 535 aa12.3□□□□□ -0.44
UBBP4-201ENST00000583708 PHKG2P15735 406 aa12.3□□□□□ -0.44
UBBP4-201ENST00000583708 ZNF530Q6P9A1 599 aaPredicted RBP12.3□□□□□ -0.44
UBBP4-201ENST00000583708 RGS12O14924 1447 aa12.29□□□□□ -0.44
UBBP4-201ENST00000583708 GNAT3A8MTJ3 354 aa12.29□□□□□ -0.44
UBBP4-201ENST00000583708 NFE2L2Q16236 605 aa12.29□□□□□ -0.44
UBBP4-201ENST00000583708 MTHFSDQ2M296 383 aaKnown RBP12.29□□□□□ -0.44
UBBP4-201ENST00000583708 CCDC184Q52MB2 194 aa12.29□□□□□ -0.44
UBBP4-201ENST00000583708 MARCH10Q8NA82 808 aaPredicted RBP12.29□□□□□ -0.44
UBBP4-201ENST00000583708 DDX54Q8TDD1 881 aaKnown RBP12.29□□□□□ -0.44
UBBP4-201ENST00000583708 CYP27B1O15528 508 aa12.28□□□□□ -0.44
UBBP4-201ENST00000583708 RTF1Q92541 710 aaKnown RBP12.28□□□□□ -0.44
UBBP4-201ENST00000583708 PHACTR3Q96KR7 559 aa12.28□□□□□ -0.44
UBBP4-201ENST00000583708 CALD1Q05682 793 aaKnown RBP12.27□□□□□ -0.45
UBBP4-201ENST00000583708 CCDC27Q2M243 656 aa12.27□□□□□ -0.45
UBBP4-201ENST00000583708 RGPD2P0DJD1 1756 aa12.27□□□□□ -0.45
UBBP4-201ENST00000583708 TMPOP42166 694 aaKnown RBP12.26□□□□□ -0.45
UBBP4-201ENST00000583708 BCL11BQ9C0K0 894 aaPredicted RBP12.26□□□□□ -0.45
UBBP4-201ENST00000583708 BABAM1Q9NWV8 329 aa12.26□□□□□ -0.45
UBBP4-201ENST00000583708 PKD1L3Q7Z443 1732 aa12.25□□□□□ -0.45
UBBP4-201ENST00000583708 FAM9BQ8IZU0 186 aa12.25□□□□□ -0.45
UBBP4-201ENST00000583708 MAP3K5Q99683 1374 aa12.25□□□□□ -0.45
UBBP4-201ENST00000583708 WNK3Q9BYP7 1800 aa12.25□□□□□ -0.45
UBBP4-201ENST00000583708 RIPK4P57078 832 aa12.24□□□□□ -0.45
UBBP4-201ENST00000583708 LRRC37A3O60309 1634 aa12.23□□□□□ -0.45
UBBP4-201ENST00000583708 APAF1O14727 1248 aa12.23□□□□□ -0.45
UBBP4-201ENST00000583708 RNMTO43148 476 aaKnown RBP12.23□□□□□ -0.45
UBBP4-201ENST00000583708 SMARCC1Q92922 1105 aaPredicted RBP12.23□□□□□ -0.45
UBBP4-201ENST00000583708 CEMIPQ8WUJ3 1361 aa12.22□□□□□ -0.45
UBBP4-201ENST00000583708 CABP4P57796 275 aa12.22□□□□□ -0.45
UBBP4-201ENST00000583708 TEFQ10587 303 aa12.22□□□□□ -0.45
UBBP4-201ENST00000583708 SF3B2Q13435 895 aaKnown RBP12.22□□□□□ -0.45
UBBP4-201ENST00000583708 PLSCR1O15162 318 aa12.21□□□□□ -0.45
UBBP4-201ENST00000583708 TAF7Q15545 349 aaPredicted RBP12.21□□□□□ -0.45
UBBP4-201ENST00000583708 MPRIPQ6WCQ1 1025 aa12.21□□□□□ -0.45
UBBP4-201ENST00000583708 WDR63Q8IWG1 891 aa12.21□□□□□ -0.45
UBBP4-201ENST00000583708 CCDC146Q8IYE0 955 aa12.21□□□□□ -0.45
UBBP4-201ENST00000583708 IL17REQ8NFR9 667 aa12.21□□□□□ -0.45
UBBP4-201ENST00000583708 SLC52A2Q9HAB3 445 aa12.21□□□□□ -0.45
UBBP4-201ENST00000583708 TMOD3Q9NYL9 352 aa12.21□□□□□ -0.45
UBBP4-201ENST00000583708 IL16Q14005 1332 aa12.2□□□□□ -0.46
UBBP4-201ENST00000583708 PRIM1P49642 420 aaKnown RBP12.2□□□□□ -0.46
UBBP4-201ENST00000583708 CHMP4AQ9BY43 222 aa12.19□□□□□ -0.46
UBBP4-201ENST00000583708 NFATC2IPQ8NCF5 419 aa12.18□□□□□ -0.46
UBBP4-201ENST00000583708 LGR6Q9HBX8 967 aa12.18□□□□□ -0.46
UBBP4-201ENST00000583708 TRIM35Q9UPQ4 493 aa12.18□□□□□ -0.46
UBBP4-201ENST00000583708 KDM6AO15550 1401 aaPredicted RBP12.18□□□□□ -0.46
UBBP4-201ENST00000583708 BRWD3Q6RI45 1802 aa12.18□□□□□ -0.46
UBBP4-201ENST00000583708 TRIM37O94972 964 aa12.17□□□□□ -0.46
UBBP4-201ENST00000583708 BAG6P46379 1132 aa12.17□□□□□ -0.46
UBBP4-201ENST00000583708 GNAI1P63096 354 aa12.17□□□□□ -0.46
UBBP4-201ENST00000583708 WWC1Q8IX03 1113 aa12.17□□□□□ -0.46
UBBP4-201ENST00000583708 PIGBQ92521 554 aa12.17□□□□□ -0.46
UBBP4-201ENST00000583708 ADAMTS7Q9UKP4 1686 aa12.16□□□□□ -0.46
UBBP4-201ENST00000583708 NEUROD2Q15784 382 aa12.16□□□□□ -0.46
UBBP4-201ENST00000583708 SLC27A3Q5K4L6 730 aa12.16□□□□□ -0.46
UBBP4-201ENST00000583708 VSIG10Q8N0Z9 540 aa12.16□□□□□ -0.46
UBBP4-201ENST00000583708 SYTL4Q96C24 671 aaPredicted RBP12.16□□□□□ -0.46
UBBP4-201ENST00000583708 CFAP44Q96MT7 982 aa12.16□□□□□ -0.46
UBBP4-201ENST00000583708 TEX13AQ9BXU3 409 aaPredicted RBP12.16□□□□□ -0.46
UBBP4-201ENST00000583708 IFT57Q9NWB7 429 aa12.16□□□□□ -0.46
UBBP4-201ENST00000583708 SHANK3Q9BYB0 1731 aa12.16□□□□□ -0.46
UBBP4-201ENST00000583708 MRC1P22897 1456 aa12.15□□□□□ -0.46
UBBP4-201ENST00000583708 SOS1Q07889 1333 aaPredicted RBP12.15□□□□□ -0.46
UBBP4-201ENST00000583708 BTBD11A6QL63 1104 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms