RNA–Protein interactions for RNA: ENST00000565452.1

VPS9D1-205, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 178 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-205ENST00000565452 COL24A1Q17RW2 1714 aa13.06□□□□□ -0.32
VPS9D1-205ENST00000565452 HTRA3P83110 453 aa13.06□□□□□ -0.32
VPS9D1-205ENST00000565452 NMRK2Q9NPI5 230 aa13.06□□□□□ -0.32
VPS9D1-205ENST00000565452 USP47Q96K76 1375 aa13.06□□□□□ -0.32
VPS9D1-205ENST00000565452 BTAF1O14981 1849 aa13.05□□□□□ -0.32
VPS9D1-205ENST00000565452 ARHGAP27Q6ZUM4 889 aa13.05□□□□□ -0.32
VPS9D1-205ENST00000565452 ZCRB1Q8TBF4 217 aaKnown RBP13.05□□□□□ -0.32
VPS9D1-205ENST00000565452 TRPM1Q7Z4N2 1603 aa13.05□□□□□ -0.32
VPS9D1-205ENST00000565452 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.03□□□□□ -0.32
VPS9D1-205ENST00000565452 QSER1Q2KHR3 1735 aa13.02□□□□□ -0.32
VPS9D1-205ENST00000565452 WNK3Q9BYP7 1800 aa13.02□□□□□ -0.32
VPS9D1-205ENST00000565452 AK7Q96M32 723 aa13.02□□□□□ -0.33
VPS9D1-205ENST00000565452 KTN1Q86UP2 1357 aaKnown RBP13.02□□□□□ -0.33
VPS9D1-205ENST00000565452 TGFB2P61812 414 aa13.01□□□□□ -0.33
VPS9D1-205ENST00000565452 IP6K1Q92551 441 aa13.01□□□□□ -0.33
VPS9D1-205ENST00000565452 LTV1Q96GA3 475 aaPredicted RBP13.01□□□□□ -0.33
VPS9D1-205ENST00000565452 PCDH10Q9P2E7 1040 aa13.01□□□□□ -0.33
VPS9D1-205ENST00000565452 BCS1LQ9Y276 419 aa13.01□□□□□ -0.33
VPS9D1-205ENST00000565452 USP31Q70CQ4 1352 aa13□□□□□ -0.33
VPS9D1-205ENST00000565452 KDM2BQ8NHM5 1336 aa13□□□□□ -0.33
VPS9D1-205ENST00000565452 NSD2O96028 1365 aa12.99□□□□□ -0.33
VPS9D1-205ENST00000565452 HSPA1AP0DMV8 641 aaKnown RBP12.99□□□□□ -0.33
VPS9D1-205ENST00000565452 HSPA1BP0DMV9 641 aaKnown RBP12.99□□□□□ -0.33
VPS9D1-205ENST00000565452 SMC1BQ8NDV3 1235 aa12.99□□□□□ -0.33
VPS9D1-205ENST00000565452 PIK3C2AO00443 1686 aa12.99□□□□□ -0.33
VPS9D1-205ENST00000565452 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.98□□□□□ -0.33
VPS9D1-205ENST00000565452 PHF14O94880 888 aa12.98□□□□□ -0.33
VPS9D1-205ENST00000565452 C9orf131Q5VYM1 1079 aa12.98□□□□□ -0.33
VPS9D1-205ENST00000565452 SMARCC1Q92922 1105 aaPredicted RBP12.98□□□□□ -0.33
VPS9D1-205ENST00000565452 RRAGCQ9HB90 399 aa12.98□□□□□ -0.33
VPS9D1-205ENST00000565452 RGPD5Q99666 1765 aa12.98□□□□□ -0.33
VPS9D1-205ENST00000565452 NFAT5O94916 1531 aa12.98□□□□□ -0.33
VPS9D1-205ENST00000565452 A0A0G2JLW4 131 aa12.97□□□□□ -0.33
VPS9D1-205ENST00000565452 FCHSD2O94868 740 aa12.97□□□□□ -0.33
VPS9D1-205ENST00000565452 NME9Q86XW9 330 aa12.97□□□□□ -0.33
VPS9D1-205ENST00000565452 SSFA2P28290 1259 aa12.96□□□□□ -0.33
VPS9D1-205ENST00000565452 MPRIPQ6WCQ1 1025 aa12.96□□□□□ -0.33
VPS9D1-205ENST00000565452 CGNL1Q0VF96 1302 aa12.95□□□□□ -0.34
VPS9D1-205ENST00000565452 MMP10P09238 476 aa12.94□□□□□ -0.34
VPS9D1-205ENST00000565452 HDGFL2Q7Z4V5 671 aaPredicted RBP12.94□□□□□ -0.34
VPS9D1-205ENST00000565452 NSD3Q9BZ95 1437 aa12.94□□□□□ -0.34
VPS9D1-205ENST00000565452 PALLDQ8WX93 1383 aa12.94□□□□□ -0.34
VPS9D1-205ENST00000565452 RAB3GAP2Q9H2M9 1393 aa12.94□□□□□ -0.34
VPS9D1-205ENST00000565452 PLEKHG2Q9H7P9 1386 aa12.94□□□□□ -0.34
VPS9D1-205ENST00000565452 PCNTO95613 3336 aa12.93□□□□□ -0.34
VPS9D1-205ENST00000565452 AMPHP49418 695 aa12.93□□□□□ -0.34
VPS9D1-205ENST00000565452 SMIM5Q71RC9 77 aa12.93□□□□□ -0.34
VPS9D1-205ENST00000565452 NLGN1Q8N2Q7 840 aa12.93□□□□□ -0.34
VPS9D1-205ENST00000565452 RAPGEF4Q8WZA2 1011 aa12.93□□□□□ -0.34
VPS9D1-205ENST00000565452 DPEP1P16444 411 aa12.92□□□□□ -0.34
VPS9D1-205ENST00000565452 AMIGO3Q86WK7 504 aa12.92□□□□□ -0.34
VPS9D1-205ENST00000565452 TMC1Q8TDI8 760 aa12.92□□□□□ -0.34
VPS9D1-205ENST00000565452 CCDC87Q9NVE4 849 aa12.92□□□□□ -0.34
VPS9D1-205ENST00000565452 WDR90Q96KV7 1748 aa12.91□□□□□ -0.34
VPS9D1-205ENST00000565452 TUBGCP6Q96RT7 1819 aa12.91□□□□□ -0.34
VPS9D1-205ENST00000565452 TATP17735 454 aaPredicted RBP12.91□□□□□ -0.34
VPS9D1-205ENST00000565452 TMF1P82094 1093 aa12.91□□□□□ -0.34
VPS9D1-205ENST00000565452 RNF181Q9P0P0 153 aa12.91□□□□□ -0.34
VPS9D1-205ENST00000565452 PIM2Q9P1W9 311 aa12.91□□□□□ -0.34
VPS9D1-205ENST00000565452 QRICH2Q9H0J4 1663 aa12.91□□□□□ -0.34
VPS9D1-205ENST00000565452 VEGFAP15692 232 aaPredicted RBP12.9□□□□□ -0.34
VPS9D1-205ENST00000565452 HOXC9P31274 260 aa12.9□□□□□ -0.34
VPS9D1-205ENST00000565452 TERF2IPQ9NYB0 399 aa12.9□□□□□ -0.34
VPS9D1-205ENST00000565452 LY75O60449 1722 aa12.89□□□□□ -0.35
VPS9D1-205ENST00000565452 GNPATO15228 680 aa12.89□□□□□ -0.35
VPS9D1-205ENST00000565452 DALRD3Q5D0E6 543 aaKnown RBP12.89□□□□□ -0.35
VPS9D1-205ENST00000565452 TRAPPC3LQ5T215 181 aa12.89□□□□□ -0.35
VPS9D1-205ENST00000565452 LOC102724428A0A0B4J2F2 783 aa12.88□□□□□ -0.35
VPS9D1-205ENST00000565452 SIK1P57059 783 aa12.88□□□□□ -0.35
VPS9D1-205ENST00000565452 NBPF6Q5VWK0 638 aa12.88□□□□□ -0.35
VPS9D1-205ENST00000565452 NBPF4Q96M43 638 aa12.88□□□□□ -0.35
VPS9D1-205ENST00000565452 PRDM10Q9NQV6 1147 aa12.88□□□□□ -0.35
VPS9D1-205ENST00000565452 PARP3Q9Y6F1 533 aa12.88□□□□□ -0.35
VPS9D1-205ENST00000565452 KIAA1210Q9ULL0 1709 aa12.88□□□□□ -0.35
VPS9D1-205ENST00000565452 PCDH11XQ9BZA7 1347 aa12.88□□□□□ -0.35
VPS9D1-205ENST00000565452 PCDH11YQ9BZA8 1340 aa12.88□□□□□ -0.35
VPS9D1-205ENST00000565452 PXDNLA1KZ92 1463 aa12.87□□□□□ -0.35
VPS9D1-205ENST00000565452 SBNO2Q9Y2G9 1366 aa12.87□□□□□ -0.35
VPS9D1-205ENST00000565452 LINC00116Q8NCU8 138 aa12.87□□□□□ -0.35
VPS9D1-205ENST00000565452 PIGBQ92521 554 aa12.87□□□□□ -0.35
VPS9D1-205ENST00000565452 COG3Q96JB2 828 aa12.87□□□□□ -0.35
VPS9D1-205ENST00000565452 SLC12A5Q9H2X9 1139 aa12.87□□□□□ -0.35
VPS9D1-205ENST00000565452 CICQ96RK0 1608 aaPredicted RBP12.87□□□□□ -0.35
VPS9D1-205ENST00000565452 C10orf71Q711Q0 1435 aa12.87□□□□□ -0.35
VPS9D1-205ENST00000565452 KCNA3P22001 575 aa12.86□□□□□ -0.35
VPS9D1-205ENST00000565452 ATP6V1AP38606 617 aa12.86□□□□□ -0.35
VPS9D1-205ENST00000565452 DCAF5Q96JK2 942 aa12.86□□□□□ -0.35
VPS9D1-205ENST00000565452 MAP3K19Q56UN5 1328 aa12.86□□□□□ -0.35
VPS9D1-205ENST00000565452 KCPQ6ZWJ8 1503 aa12.85□□□□□ -0.35
VPS9D1-205ENST00000565452 RTCBQ9Y3I0 505 aaKnown RBP12.85□□□□□ -0.35
VPS9D1-205ENST00000565452 GLTPD2A6NH11 291 aa12.84□□□□□ -0.35
VPS9D1-205ENST00000565452 USHBP1Q8N6Y0 703 aa12.84□□□□□ -0.35
VPS9D1-205ENST00000565452 EDC4Q6P2E9 1401 aaKnown RBP12.83□□□□□ -0.36
VPS9D1-205ENST00000565452 CYP27B1O15528 508 aa12.83□□□□□ -0.36
VPS9D1-205ENST00000565452 FBLN1P23142 703 aa12.83□□□□□ -0.36
VPS9D1-205ENST00000565452 RFC4P35249 363 aa12.83□□□□□ -0.36
VPS9D1-205ENST00000565452 CTCFP49711 727 aaPredicted RBP12.83□□□□□ -0.36
VPS9D1-205ENST00000565452 AIDAQ96BJ3 306 aa12.83□□□□□ -0.36
VPS9D1-205ENST00000565452 ZC3H4Q9UPT8 1303 aaKnown RBP12.83□□□□□ -0.36
VPS9D1-205ENST00000565452 MEGF6O75095 1541 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms