RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 SURF6O75683 361 aaKnown RBP7.01□□□□□ -1.29
VPS50-220ENST00000544910 NEURL4Q96JN8 1562 aa7.01□□□□□ -1.29
VPS50-220ENST00000544910 SMARCA5O60264 1052 aaPredicted RBP7.01□□□□□ -1.29
VPS50-220ENST00000544910 TBC1D9Q6ZT07 1266 aa7.01□□□□□ -1.29
VPS50-220ENST00000544910 ERC1Q8IUD2 1116 aa7.01□□□□□ -1.29
VPS50-220ENST00000544910 ISY1Q9ULR0 285 aaKnown RBP7.01□□□□□ -1.29
VPS50-220ENST00000544910 AMOTL2Q9Y2J4 779 aa7.01□□□□□ -1.29
VPS50-220ENST00000544910 ATP7BP35670 1465 aa7.01□□□□□ -1.29
VPS50-220ENST00000544910 ZBTB40Q9NUA8 1239 aa7□□□□□ -1.29
VPS50-220ENST00000544910 GORABQ5T7V8 394 aa7□□□□□ -1.29
VPS50-220ENST00000544910 MROH2AA6NES4 1674 aa7□□□□□ -1.29
VPS50-220ENST00000544910 TTC22Q5TAA0 569 aa7□□□□□ -1.29
VPS50-220ENST00000544910 RIC3Q7Z5B4 369 aa7□□□□□ -1.29
VPS50-220ENST00000544910 ZRANB1Q9UGI0 708 aa7□□□□□ -1.29
VPS50-220ENST00000544910 NASPP49321 788 aaPredicted RBP7□□□□□ -1.29
VPS50-220ENST00000544910 NEK4P51957 841 aa7□□□□□ -1.29
VPS50-220ENST00000544910 FOXD4L6Q3SYB3 417 aaPredicted RBP7□□□□□ -1.29
VPS50-220ENST00000544910 RNF20Q5VTR2 975 aa7□□□□□ -1.29
VPS50-220ENST00000544910 FOXD4L3Q6VB84 417 aaPredicted RBP7□□□□□ -1.29
VPS50-220ENST00000544910 SMC3Q9UQE7 1217 aa7□□□□□ -1.29
VPS50-220ENST00000544910 ZNF330Q9Y3S2 320 aaPredicted RBP7□□□□□ -1.29
VPS50-220ENST00000544910 ZC3H13Q5T200 1668 aaKnown RBP7□□□□□ -1.29
VPS50-220ENST00000544910 EIF4A2Q14240 407 aaKnown RBP7□□□□□ -1.29
VPS50-220ENST00000544910 TAF7LQ5H9L4 462 aa7□□□□□ -1.29
VPS50-220ENST00000544910 RAPGEF4Q8WZA2 1011 aa7□□□□□ -1.29
VPS50-220ENST00000544910 PLEKHF1Q96S99 279 aa7□□□□□ -1.29
VPS50-220ENST00000544910 GRPEL1Q9HAV7 217 aa7□□□□□ -1.29
VPS50-220ENST00000544910 FAM135BQ49AJ0 1406 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 VAMP4O75379 141 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 SEC24BO95487 1268 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 IL13P35225 146 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 C8orf58Q8NAV2 365 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.99□□□□□ -1.29
VPS50-220ENST00000544910 TAOK2Q9UL54 1235 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 BTBD11A6QL63 1104 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 AIMP1Q12904 312 aaKnown RBP6.99□□□□□ -1.29
VPS50-220ENST00000544910 HIP1O00291 1037 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 RAB11FIP3O75154 756 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 MX1P20591 662 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 CCDC173Q0VFZ6 552 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 CAVIN1Q6NZI2 390 aaKnown RBP6.99□□□□□ -1.29
VPS50-220ENST00000544910 ZNF530Q6P9A1 599 aaPredicted RBP6.99□□□□□ -1.29
VPS50-220ENST00000544910 ANKLE2Q86XL3 938 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 SMC5Q8IY18 1101 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 PHACTR3Q96KR7 559 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 ARHGAP31Q2M1Z3 1444 aa6.99□□□□□ -1.29
VPS50-220ENST00000544910 KIDINS220Q9ULH0 1771 aa6.98□□□□□ -1.29
VPS50-220ENST00000544910 H3BQV1 296 aa6.98□□□□□ -1.29
VPS50-220ENST00000544910 GNL2Q13823 731 aaKnown RBP6.98□□□□□ -1.29
VPS50-220ENST00000544910 TAF7Q15545 349 aaPredicted RBP6.98□□□□□ -1.29
VPS50-220ENST00000544910 IFFO2Q5TF58 517 aa6.98□□□□□ -1.29
VPS50-220ENST00000544910 PRPF40AO75400 957 aaKnown RBP6.98□□□□□ -1.29
VPS50-220ENST00000544910 KCNH5Q8NCM2 988 aa6.98□□□□□ -1.29
VPS50-220ENST00000544910 MAP4K4O95819 1239 aaPredicted RBP6.98□□□□□ -1.29
VPS50-220ENST00000544910 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.98□□□□□ -1.29
VPS50-220ENST00000544910 CLASRPQ8N2M8 674 aaKnown RBP6.98□□□□□ -1.29
VPS50-220ENST00000544910 SNX21Q969T3 373 aa6.98□□□□□ -1.29
VPS50-220ENST00000544910 KIF3AQ9Y496 699 aa6.98□□□□□ -1.29
VPS50-220ENST00000544910 NRXN1Q9ULB1 1477 aa6.98□□□□□ -1.29
VPS50-220ENST00000544910 ATF3P18847 181 aa6.98□□□□□ -1.29
VPS50-220ENST00000544910 PSMA5P28066 241 aa6.98□□□□□ -1.29
VPS50-220ENST00000544910 TSPYL6Q8N831 410 aa6.98□□□□□ -1.29
VPS50-220ENST00000544910 VWDEQ8N2E2 1590 aa6.98□□□□□ -1.29
VPS50-220ENST00000544910 MBD3O95983 291 aa6.98□□□□□ -1.29
VPS50-220ENST00000544910 TNPO1Q92973 898 aaKnown RBP6.98□□□□□ -1.29
VPS50-220ENST00000544910 TULP4Q9NRJ4 1543 aa6.97□□□□□ -1.29
VPS50-220ENST00000544910 F6X3S4 739 aa6.97□□□□□ -1.29
VPS50-220ENST00000544910 AEBP1Q8IUX7 1158 aa6.97□□□□□ -1.29
VPS50-220ENST00000544910 CHMP4CQ96CF2 233 aa6.97□□□□□ -1.29
VPS50-220ENST00000544910 FAM184AQ8NB25 1140 aa6.97□□□□□ -1.29
VPS50-220ENST00000544910 NLRP2Q9NX02 1062 aa6.97□□□□□ -1.29
VPS50-220ENST00000544910 EXOC6BQ9Y2D4 811 aa6.97□□□□□ -1.29
VPS50-220ENST00000544910 CCDC9Q9Y3X0 531 aaKnown RBP6.97□□□□□ -1.29
VPS50-220ENST00000544910 PIK3R4Q99570 1358 aa6.97□□□□□ -1.29
VPS50-220ENST00000544910 LETM1O95202 739 aaPredicted RBP6.97□□□□□ -1.29
VPS50-220ENST00000544910 FLT4P35916 1363 aa6.97□□□□□ -1.29
VPS50-220ENST00000544910 MSH6P52701 1360 aa6.97□□□□□ -1.29
VPS50-220ENST00000544910 ZBTB7BO15156 539 aaPredicted RBP6.97□□□□□ -1.29
VPS50-220ENST00000544910 FLIIQ13045 1269 aa6.97□□□□□ -1.29
VPS50-220ENST00000544910 GOLGA6L1Q8N7Z2 621 aa6.97□□□□□ -1.29
VPS50-220ENST00000544910 SRGAP3O43295 1099 aa6.96□□□□□ -1.29
VPS50-220ENST00000544910 CEBPAP49715 358 aaPredicted RBP6.96□□□□□ -1.29
VPS50-220ENST00000544910 USHBP1Q8N6Y0 703 aa6.96□□□□□ -1.29
VPS50-220ENST00000544910 ANKRD44Q8N8A2 993 aa6.96□□□□□ -1.29
VPS50-220ENST00000544910 FSD1Q9BTV5 496 aa6.96□□□□□ -1.29
VPS50-220ENST00000544910 KIF24Q5T7B8 1368 aa6.96□□□□□ -1.29
VPS50-220ENST00000544910 ALKQ9UM73 1620 aa6.96□□□□□ -1.29
VPS50-220ENST00000544910 PPLO60437 1756 aa6.96□□□□□ -1.29
VPS50-220ENST00000544910 TPM2P07951 284 aa6.96□□□□□ -1.29
VPS50-220ENST00000544910 HSP90AB2PQ58FF8 381 aa6.96□□□□□ -1.29
VPS50-220ENST00000544910 NUTM1Q86Y26 1132 aa6.96□□□□□ -1.29
VPS50-220ENST00000544910 TSPY26PQ9H489 355 aa6.96□□□□□ -1.29
VPS50-220ENST00000544910 CCDC39Q9UFE4 941 aa6.96□□□□□ -1.29
VPS50-220ENST00000544910 TSPOAP1O95153 1857 aa6.96□□□□□ -1.3
VPS50-220ENST00000544910 NEXMIFQ5QGS0 1516 aa6.96□□□□□ -1.3
VPS50-220ENST00000544910 TPM4P67936 248 aa6.96□□□□□ -1.3
VPS50-220ENST00000544910 LRRFIP1Q32MZ4 808 aaKnown RBP6.96□□□□□ -1.3
VPS50-220ENST00000544910 ARID3AQ99856 593 aa6.96□□□□□ -1.3
VPS50-220ENST00000544910 DIP2CQ9Y2E4 1556 aa6.96□□□□□ -1.3
VPS50-220ENST00000544910 MYO3AQ8NEV4 1616 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms