RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	TRIM27	P14373	513 aa		18.99	■□□□□ 0.63
CHFR-223	ENST00000544268	KIF24	Q5T7B8	1368 aa		18.99	■□□□□ 0.63
CHFR-223	ENST00000544268	NPHP3	Q7Z494	1330 aa		18.98	■□□□□ 0.63
CHFR-223	ENST00000544268	BRINP3	Q76B58	766 aa		18.98	■□□□□ 0.63
CHFR-223	ENST00000544268	KCNH5	Q8NCM2	988 aa		18.98	■□□□□ 0.63
CHFR-223	ENST00000544268	GC	P02774	474 aa		18.98	■□□□□ 0.63
CHFR-223	ENST00000544268	MVP	Q14764	893 aa	Known RBP	18.98	■□□□□ 0.63
CHFR-223	ENST00000544268	FTSJ3	Q8IY81	847 aa	Known RBP	18.98	■□□□□ 0.63
CHFR-223	ENST00000544268	SLAIN2	Q9P270	581 aa		18.98	■□□□□ 0.63
CHFR-223	ENST00000544268	ALS2	Q96Q42	1657 aa		18.97	■□□□□ 0.63
CHFR-223	ENST00000544268	NFE2L2	Q16236	605 aa		18.97	■□□□□ 0.63
CHFR-223	ENST00000544268	NOB1	Q9ULX3	412 aa	Known RBP	18.97	■□□□□ 0.63
CHFR-223	ENST00000544268	SLIT3	O75094	1523 aa		18.97	■□□□□ 0.63
CHFR-223	ENST00000544268	FRAT2	O75474	233 aa	Predicted RBP	18.96	■□□□□ 0.63
CHFR-223	ENST00000544268	ZKSCAN2	Q63HK3	967 aa		18.96	■□□□□ 0.63
CHFR-223	ENST00000544268	DZIP1L	Q8IYY4	767 aa	Known RBP	18.96	■□□□□ 0.63
CHFR-223	ENST00000544268	EYA1	Q99502	592 aa		18.96	■□□□□ 0.63
CHFR-223	ENST00000544268	RTL1	A6NKG5	1358 aa		18.96	■□□□□ 0.63
CHFR-223	ENST00000544268	ARHGEF10	O15013	1369 aa		18.96	■□□□□ 0.63
CHFR-223	ENST00000544268	ZBTB7C	A1YPR0	619 aa		18.95	■□□□□ 0.62
CHFR-223	ENST00000544268	PDIA4	P13667	645 aa	Known RBP	18.95	■□□□□ 0.62
CHFR-223	ENST00000544268	ITPRIP	Q8IWB1	547 aa		18.95	■□□□□ 0.62
CHFR-223	ENST00000544268	LTV1	Q96GA3	475 aa	Predicted RBP	18.95	■□□□□ 0.62
CHFR-223	ENST00000544268	PXDN	Q92626	1479 aa		18.95	■□□□□ 0.62
CHFR-223	ENST00000544268	AAMP	Q13685	434 aa		18.94	■□□□□ 0.62
CHFR-223	ENST00000544268	IP6K1	Q92551	441 aa		18.94	■□□□□ 0.62
CHFR-223	ENST00000544268		A0A0U1RQG5	324 aa	Predicted RBP	18.94	■□□□□ 0.62
CHFR-223	ENST00000544268	IGSF1	Q8N6C5	1336 aa		18.94	■□□□□ 0.62
CHFR-223	ENST00000544268	ARHGEF25	Q86VW2	580 aa		18.93	■□□□□ 0.62
CHFR-223	ENST00000544268	MED1	Q15648	1581 aa	Predicted RBP	18.92	■□□□□ 0.62
CHFR-223	ENST00000544268	TMEM57	Q8N5G2	664 aa		18.92	■□□□□ 0.62
CHFR-223	ENST00000544268	ELL2	O00472	640 aa	Predicted RBP	18.92	■□□□□ 0.62
CHFR-223	ENST00000544268	DLG5	Q8TDM6	1919 aa		18.92	■□□□□ 0.62
CHFR-223	ENST00000544268	TNS3	Q68CZ2	1445 aa		18.92	■□□□□ 0.62
CHFR-223	ENST00000544268	RRAGD	Q9NQL2	400 aa	Predicted RBP	18.91	■□□□□ 0.62
CHFR-223	ENST00000544268	KDR	P35968	1356 aa		18.91	■□□□□ 0.62
CHFR-223	ENST00000544268	PHRF1	Q9P1Y6	1649 aa	Known RBP	18.91	■□□□□ 0.62
CHFR-223	ENST00000544268	SPATA31A3	Q5VYP0	1347 aa		18.9	■□□□□ 0.62
CHFR-223	ENST00000544268	RBM10	P98175	930 aa	Known RBP	18.9	■□□□□ 0.62
CHFR-223	ENST00000544268	ATF7IP	Q6VMQ6	1270 aa		18.9	■□□□□ 0.62
CHFR-223	ENST00000544268	TSPYL6	Q8N831	410 aa		18.9	■□□□□ 0.62
CHFR-223	ENST00000544268	IL16	Q14005	1332 aa		18.89	■□□□□ 0.61
CHFR-223	ENST00000544268	CABLES1	Q8TDN4	633 aa		18.89	■□□□□ 0.61
CHFR-223	ENST00000544268	RWDD1	Q9H446	243 aa	Predicted RBP	18.89	■□□□□ 0.61
CHFR-223	ENST00000544268	ZC3H6	P61129	1189 aa	Known RBP	18.88	■□□□□ 0.61
CHFR-223	ENST00000544268	FAM83G	A6ND36	823 aa		18.88	■□□□□ 0.61
CHFR-223	ENST00000544268	USHBP1	Q8N6Y0	703 aa		18.87	■□□□□ 0.61
CHFR-223	ENST00000544268	DCTN1	Q14203	1278 aa		18.86	■□□□□ 0.61
CHFR-223	ENST00000544268	SOS2	Q07890	1332 aa	Predicted RBP	18.86	■□□□□ 0.61
CHFR-223	ENST00000544268	L1TD1	Q5T7N2	865 aa	Known RBP	18.86	■□□□□ 0.61
CHFR-223	ENST00000544268	AXIN2	Q9Y2T1	843 aa		18.86	■□□□□ 0.61
CHFR-223	ENST00000544268	RRP9	O43818	475 aa	Known RBP	18.85	■□□□□ 0.61
CHFR-223	ENST00000544268	LMOD3	Q0VAK6	560 aa		18.85	■□□□□ 0.61
CHFR-223	ENST00000544268	NBPF6	Q5VWK0	638 aa		18.85	■□□□□ 0.61
CHFR-223	ENST00000544268	NBPF4	Q96M43	638 aa		18.85	■□□□□ 0.61
CHFR-223	ENST00000544268	VIRMA	Q69YN4	1812 aa	Known RBP	18.85	■□□□□ 0.61
CHFR-223	ENST00000544268	C1orf115	Q9H7X2	142 aa		18.85	■□□□□ 0.61
CHFR-223	ENST00000544268	LTBP4	Q8N2S1	1624 aa		18.84	■□□□□ 0.61
CHFR-223	ENST00000544268	MTHFSD	Q2M296	383 aa	Known RBP	18.84	■□□□□ 0.61
CHFR-223	ENST00000544268	LRRC59	Q96AG4	307 aa	Known RBP	18.84	■□□□□ 0.61
CHFR-223	ENST00000544268	SLK	Q9H2G2	1235 aa	Predicted RBP	18.84	■□□□□ 0.61
CHFR-223	ENST00000544268	RGPD2	P0DJD1	1756 aa		18.83	■□□□□ 0.61
CHFR-223	ENST00000544268	HSP90AA2P	Q14568	343 aa	Predicted RBP	18.83	■□□□□ 0.61
CHFR-223	ENST00000544268	CRYBG1	Q9Y4K1	1723 aa		18.83	■□□□□ 0.6
CHFR-223	ENST00000544268	ANKRD24	Q8TF21	1146 aa		18.82	■□□□□ 0.6
CHFR-223	ENST00000544268	ZBTB40	Q9NUA8	1239 aa		18.82	■□□□□ 0.6
CHFR-223	ENST00000544268	RGPD5	Q99666	1765 aa		18.82	■□□□□ 0.6
CHFR-223	ENST00000544268	CT47B1	P0C2W7	299 aa	Predicted RBP	18.82	■□□□□ 0.6
CHFR-223	ENST00000544268	CALD1	Q05682	793 aa	Known RBP	18.82	■□□□□ 0.6
CHFR-223	ENST00000544268	SPRYD3	Q8NCJ5	442 aa		18.82	■□□□□ 0.6
CHFR-223	ENST00000544268	BCL11B	Q9C0K0	894 aa	Predicted RBP	18.81	■□□□□ 0.6
CHFR-223	ENST00000544268	DDX19B	Q9UMR2	479 aa		18.81	■□□□□ 0.6
CHFR-223	ENST00000544268	MCM10	Q7L590	875 aa		18.81	■□□□□ 0.6
CHFR-223	ENST00000544268	MBIP	Q9NS73	344 aa		18.81	■□□□□ 0.6
CHFR-223	ENST00000544268	IFT57	Q9NWB7	429 aa		18.8	■□□□□ 0.6
CHFR-223	ENST00000544268	NHSL1	Q5SYE7	1610 aa		18.8	■□□□□ 0.6
CHFR-223	ENST00000544268	HSP90AA1	P07900	732 aa	Known RBP	18.8	■□□□□ 0.6
CHFR-223	ENST00000544268	ZNF853	P0CG23	659 aa		18.8	■□□□□ 0.6
CHFR-223	ENST00000544268	VAMP4	O75379	141 aa		18.79	■□□□□ 0.6
CHFR-223	ENST00000544268	GNAI1	P63096	354 aa		18.79	■□□□□ 0.6
CHFR-223	ENST00000544268	GAS2L2	Q8NHY3	880 aa		18.79	■□□□□ 0.6
CHFR-223	ENST00000544268	CHRNA2	Q15822	529 aa		18.79	■□□□□ 0.6
CHFR-223	ENST00000544268	KRT24	Q2M2I5	525 aa		18.79	■□□□□ 0.6
CHFR-223	ENST00000544268	C8orf58	Q8NAV2	365 aa		18.79	■□□□□ 0.6
CHFR-223	ENST00000544268	TBC1D32	Q96NH3	1257 aa		18.79	■□□□□ 0.6
CHFR-223	ENST00000544268	MFAP1	P55081	439 aa	Known RBP	18.78	■□□□□ 0.6
CHFR-223	ENST00000544268	CFAP44	Q96MT7	982 aa		18.78	■□□□□ 0.6
CHFR-223	ENST00000544268	NAP1L5	Q96NT1	182 aa	Predicted RBP	18.78	■□□□□ 0.6
CHFR-223	ENST00000544268	LNPK	Q9C0E8	428 aa		18.78	■□□□□ 0.6
CHFR-223	ENST00000544268	ERBB3	P21860	1342 aa		18.78	■□□□□ 0.6
CHFR-223	ENST00000544268	KIAA0232	Q92628	1395 aa		18.78	■□□□□ 0.6
CHFR-223	ENST00000544268	HDAC1	Q13547	482 aa	Predicted RBP	18.78	■□□□□ 0.6
CHFR-223	ENST00000544268	COL18A1	P39060	1754 aa		18.77	■□□□□ 0.6
CHFR-223	ENST00000544268	KIF16B	Q96L93	1317 aa		18.76	■□□□□ 0.59
CHFR-223	ENST00000544268	CLCN1	P35523	988 aa		18.76	■□□□□ 0.59
CHFR-223	ENST00000544268	NCAPD2	Q15021	1401 aa		18.76	■□□□□ 0.59
CHFR-223	ENST00000544268	MRPL50	Q8N5N7	158 aa	Known RBP	18.75	■□□□□ 0.59
CHFR-223	ENST00000544268	CPD	O75976	1380 aa		18.75	■□□□□ 0.59
CHFR-223	ENST00000544268	SMC5	Q8IY18	1101 aa		18.75	■□□□□ 0.59
CHFR-223	ENST00000544268	RTF1	Q92541	710 aa	Known RBP	18.75	■□□□□ 0.59

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