RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 GAS2L3Q86XJ1 694 aa16.73■□□□□ 0.27
PTPN1-202ENST00000541713 L1TD1Q5T7N2 865 aaKnown RBP16.73■□□□□ 0.27
PTPN1-202ENST00000541713 NUTM1Q86Y26 1132 aa16.73■□□□□ 0.27
PTPN1-202ENST00000541713 UPF3BQ9BZI7 483 aaKnown RBP16.73■□□□□ 0.27
PTPN1-202ENST00000541713 ANO2Q9NQ90 1003 aa16.72■□□□□ 0.27
PTPN1-202ENST00000541713 MYO3AQ8NEV4 1616 aa16.72■□□□□ 0.27
PTPN1-202ENST00000541713 EID1Q9Y6B2 187 aa16.72■□□□□ 0.27
PTPN1-202ENST00000541713 ZNF692Q9BU19 519 aaPredicted RBP16.71■□□□□ 0.27
PTPN1-202ENST00000541713 A2ML1A8K2U0 1454 aa16.71■□□□□ 0.27
PTPN1-202ENST00000541713 ABCC4O15439 1325 aa16.71■□□□□ 0.27
PTPN1-202ENST00000541713 NEK4P51957 841 aa16.71■□□□□ 0.26
PTPN1-202ENST00000541713 TTC22Q5TAA0 569 aa16.71■□□□□ 0.26
PTPN1-202ENST00000541713 GBP4Q96PP9 640 aa16.71■□□□□ 0.26
PTPN1-202ENST00000541713 PHAXQ9H814 394 aaKnown RBP16.71■□□□□ 0.26
PTPN1-202ENST00000541713 CHMP4BQ9H444 224 aaKnown RBP16.7■□□□□ 0.26
PTPN1-202ENST00000541713 DCTPP1Q9H773 170 aa16.7■□□□□ 0.26
PTPN1-202ENST00000541713 PNMA6EA0A0J9YXQ4 647 aa16.7■□□□□ 0.26
PTPN1-202ENST00000541713 CCDC9Q9Y3X0 531 aaKnown RBP16.7■□□□□ 0.26
PTPN1-202ENST00000541713 RBM25P49756 843 aaKnown RBP16.69■□□□□ 0.26
PTPN1-202ENST00000541713 CAVIN1Q6NZI2 390 aaKnown RBP16.69■□□□□ 0.26
PTPN1-202ENST00000541713 CHL1O00533 1208 aa16.69■□□□□ 0.26
PTPN1-202ENST00000541713 RBM27Q9P2N5 1060 aaKnown RBP16.69■□□□□ 0.26
PTPN1-202ENST00000541713 LRRFIP2Q9Y608 721 aaKnown RBP16.69■□□□□ 0.26
PTPN1-202ENST00000541713 EDC4Q6P2E9 1401 aaKnown RBP16.68■□□□□ 0.26
PTPN1-202ENST00000541713 PRPF40AO75400 957 aaKnown RBP16.68■□□□□ 0.26
PTPN1-202ENST00000541713 ANKRD44Q8N8A2 993 aa16.68■□□□□ 0.26
PTPN1-202ENST00000541713 ARHGAP45Q92619 1136 aa16.68■□□□□ 0.26
PTPN1-202ENST00000541713 GRPEL1Q9HAV7 217 aa16.68■□□□□ 0.26
PTPN1-202ENST00000541713 ARHGAP31Q2M1Z3 1444 aa16.68■□□□□ 0.26
PTPN1-202ENST00000541713 CASC1Q6TDU7 716 aa16.68■□□□□ 0.26
PTPN1-202ENST00000541713 TRIM44Q96DX7 344 aaPredicted RBP16.68■□□□□ 0.26
PTPN1-202ENST00000541713 ZFYVE9O95405 1425 aa16.68■□□□□ 0.26
PTPN1-202ENST00000541713 OS9Q13438 667 aaPredicted RBP16.67■□□□□ 0.26
PTPN1-202ENST00000541713 LRRC59Q96AG4 307 aaKnown RBP16.67■□□□□ 0.26
PTPN1-202ENST00000541713 GDPD2Q9HCC8 539 aa16.67■□□□□ 0.26
PTPN1-202ENST00000541713 MAP2P11137 1827 aaKnown RBP16.67■□□□□ 0.26
PTPN1-202ENST00000541713 DDX11L8A8MPP1 907 aa16.67■□□□□ 0.26
PTPN1-202ENST00000541713 INTS3Q68E01 1043 aaKnown RBP16.67■□□□□ 0.26
PTPN1-202ENST00000541713 TMEM131LA2VDJ0 1609 aa16.67■□□□□ 0.26
PTPN1-202ENST00000541713 KCNQ3O43525 872 aa16.66■□□□□ 0.26
PTPN1-202ENST00000541713 AIMP1Q12904 312 aaKnown RBP16.66■□□□□ 0.26
PTPN1-202ENST00000541713 FLIIQ13045 1269 aa16.66■□□□□ 0.26
PTPN1-202ENST00000541713 RNF214Q8ND24 703 aa16.66■□□□□ 0.26
PTPN1-202ENST00000541713 SETD1BQ9UPS6 1966 aaKnown RBP16.66■□□□□ 0.26
PTPN1-202ENST00000541713 KCNA6P17658 529 aa16.65■□□□□ 0.26
PTPN1-202ENST00000541713 TNRQ92752 1358 aa16.65■□□□□ 0.26
PTPN1-202ENST00000541713 GOLGA6L22H0YM25 854 aa16.65■□□□□ 0.26
PTPN1-202ENST00000541713 SURF6O75683 361 aaKnown RBP16.65■□□□□ 0.26
PTPN1-202ENST00000541713 MPRIPQ6WCQ1 1025 aa16.65■□□□□ 0.26
PTPN1-202ENST00000541713 HDGFL1Q5TGJ6 251 aa16.65■□□□□ 0.26
PTPN1-202ENST00000541713 UNC5CLQ8IV45 518 aa16.65■□□□□ 0.26
PTPN1-202ENST00000541713 JARID2Q92833 1246 aaPredicted RBP16.65■□□□□ 0.26
PTPN1-202ENST00000541713 USP26Q9BXU7 913 aa16.64■□□□□ 0.25
PTPN1-202ENST00000541713 LGR6Q9HBX8 967 aa16.64■□□□□ 0.25
PTPN1-202ENST00000541713 HMMRO75330 724 aa16.64■□□□□ 0.25
PTPN1-202ENST00000541713 GNAI2P04899 355 aa16.64■□□□□ 0.25
PTPN1-202ENST00000541713 PIP4K2AP48426 406 aaPredicted RBP16.64■□□□□ 0.25
PTPN1-202ENST00000541713 ESCO1Q5FWF5 840 aa16.63■□□□□ 0.25
PTPN1-202ENST00000541713 ADGRB2O60241 1585 aa16.63■□□□□ 0.25
PTPN1-202ENST00000541713 PREX1Q8TCU6 1659 aa16.63■□□□□ 0.25
PTPN1-202ENST00000541713 ARID3AQ99856 593 aa16.63■□□□□ 0.25
PTPN1-202ENST00000541713 PALD1Q9ULE6 856 aa16.63■□□□□ 0.25
PTPN1-202ENST00000541713 AK9Q5TCS8 1911 aa16.62■□□□□ 0.25
PTPN1-202ENST00000541713 BAG4O95429 457 aaKnown RBP16.62■□□□□ 0.25
PTPN1-202ENST00000541713 PDE1AP54750 535 aa16.62■□□□□ 0.25
PTPN1-202ENST00000541713 RPAP2Q8IXW5 612 aaPredicted RBP16.62■□□□□ 0.25
PTPN1-202ENST00000541713 RTL1A6NKG5 1358 aa16.62■□□□□ 0.25
PTPN1-202ENST00000541713 IL17REQ8NFR9 667 aa16.62■□□□□ 0.25
PTPN1-202ENST00000541713 CPA1P15085 419 aa16.62■□□□□ 0.25
PTPN1-202ENST00000541713 RAB3GAP1Q15042 981 aa16.62■□□□□ 0.25
PTPN1-202ENST00000541713 TAOK2Q9UL54 1235 aa16.62■□□□□ 0.25
PTPN1-202ENST00000541713 NEURL4Q96JN8 1562 aa16.61■□□□□ 0.25
PTPN1-202ENST00000541713 CPSF1Q10570 1443 aaKnown RBP16.61■□□□□ 0.25
PTPN1-202ENST00000541713 CLTCQ00610 1675 aaKnown RBP16.6■□□□□ 0.25
PTPN1-202ENST00000541713 GNAT3A8MTJ3 354 aa16.6■□□□□ 0.25
PTPN1-202ENST00000541713 ST18O60284 1047 aa16.6■□□□□ 0.25
PTPN1-202ENST00000541713 UBTFL1P0CB47 393 aaPredicted RBP16.6■□□□□ 0.25
PTPN1-202ENST00000541713 FAM43AQ8N2R8 423 aa16.6■□□□□ 0.25
PTPN1-202ENST00000541713 SNX21Q969T3 373 aa16.6■□□□□ 0.25
PTPN1-202ENST00000541713 LRRCC1Q9C099 1032 aa16.6■□□□□ 0.25
PTPN1-202ENST00000541713 PSME1Q06323 249 aa16.6■□□□□ 0.25
PTPN1-202ENST00000541713 TAF7Q15545 349 aaPredicted RBP16.6■□□□□ 0.25
PTPN1-202ENST00000541713 CFAP74Q9C0B2 1584 aa16.59■□□□□ 0.25
PTPN1-202ENST00000541713 MRE11P49959 708 aa16.59■□□□□ 0.25
PTPN1-202ENST00000541713 PRAMEF22A3QJZ6 481 aa16.59■□□□□ 0.25
PTPN1-202ENST00000541713 ERC2O15083 957 aa16.59■□□□□ 0.25
PTPN1-202ENST00000541713 SRGAP3O43295 1099 aa16.59■□□□□ 0.25
PTPN1-202ENST00000541713 PLCB2Q00722 1185 aa16.59■□□□□ 0.25
PTPN1-202ENST00000541713 RABEP1Q15276 862 aa16.59■□□□□ 0.25
PTPN1-202ENST00000541713 SPG7Q9UQ90 795 aa16.58■□□□□ 0.25
PTPN1-202ENST00000541713 TMEM2Q9UHN6 1383 aa16.58■□□□□ 0.25
PTPN1-202ENST00000541713 NBPF7P0C2Y1 421 aaPredicted RBP16.58■□□□□ 0.24
PTPN1-202ENST00000541713 MX1P20591 662 aa16.58■□□□□ 0.24
PTPN1-202ENST00000541713 NCBP3Q53F19 620 aaKnown RBP16.58■□□□□ 0.24
PTPN1-202ENST00000541713 CCDC30Q5VVM6 783 aa16.58■□□□□ 0.24
PTPN1-202ENST00000541713 SIL1Q9H173 461 aa16.58■□□□□ 0.24
PTPN1-202ENST00000541713 IL25Q9H293 177 aa16.58■□□□□ 0.24
PTPN1-202ENST00000541713 CHMP3Q9Y3E7 222 aa16.58■□□□□ 0.24
PTPN1-202ENST00000541713 PI4KAP2A4QPH2 592 aa16.57■□□□□ 0.24
PTPN1-202ENST00000541713 PI4KAP1Q8N8J0 262 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 124.2 ms