RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 DDX19BQ9UMR2 479 aa18.5■□□□□ 0.55
CLIP1-216ENST00000541410 CRB1P82279 1406 aa18.5■□□□□ 0.55
CLIP1-216ENST00000541410 KCNH5Q8NCM2 988 aa18.5■□□□□ 0.55
CLIP1-216ENST00000541410 GAS2L2Q8NHY3 880 aa18.5■□□□□ 0.55
CLIP1-216ENST00000541410 ZC3H6P61129 1189 aaKnown RBP18.49■□□□□ 0.55
CLIP1-216ENST00000541410 ZNF428Q96B54 188 aa18.49■□□□□ 0.55
CLIP1-216ENST00000541410 TSPYL4Q9UJ04 414 aa18.49■□□□□ 0.55
CLIP1-216ENST00000541410 KIF24Q5T7B8 1368 aa18.49■□□□□ 0.55
CLIP1-216ENST00000541410 C1orf115Q9H7X2 142 aa18.48■□□□□ 0.55
CLIP1-216ENST00000541410 GNAT3A8MTJ3 354 aa18.47■□□□□ 0.55
CLIP1-216ENST00000541410 AXIN2Q9Y2T1 843 aa18.47■□□□□ 0.55
CLIP1-216ENST00000541410 MST1RQ04912 1400 aa18.47■□□□□ 0.55
CLIP1-216ENST00000541410 CABLES1Q8TDN4 633 aa18.47■□□□□ 0.55
CLIP1-216ENST00000541410 RWDD1Q9H446 243 aaPredicted RBP18.47■□□□□ 0.55
CLIP1-216ENST00000541410 TRPM3Q9HCF6 1732 aaPredicted RBP18.47■□□□□ 0.55
CLIP1-216ENST00000541410 RTL1A6NKG5 1358 aa18.46■□□□□ 0.55
CLIP1-216ENST00000541410 ARHGEF25Q86VW2 580 aa18.46■□□□□ 0.55
CLIP1-216ENST00000541410 BRPF1P55201 1214 aaPredicted RBP18.46■□□□□ 0.55
CLIP1-216ENST00000541410 IL17REQ8NFR9 667 aa18.46■□□□□ 0.55
CLIP1-216ENST00000541410 ZBTB40Q9NUA8 1239 aa18.46■□□□□ 0.55
CLIP1-216ENST00000541410 PDZRN3Q9UPQ7 1066 aa18.46■□□□□ 0.55
CLIP1-216ENST00000541410 ANP32AP39687 249 aaKnown RBP18.45■□□□□ 0.54
CLIP1-216ENST00000541410 AAMPQ13685 434 aa18.45■□□□□ 0.54
CLIP1-216ENST00000541410 NECTIN2Q92692 538 aa18.45■□□□□ 0.54
CLIP1-216ENST00000541410 RGPD5Q99666 1765 aa18.44■□□□□ 0.54
CLIP1-216ENST00000541410 MSH6P52701 1360 aa18.44■□□□□ 0.54
CLIP1-216ENST00000541410 C8orf34Q49A92 452 aa18.44■□□□□ 0.54
CLIP1-216ENST00000541410 ANKRD24Q8TF21 1146 aa18.43■□□□□ 0.54
CLIP1-216ENST00000541410 MAP3K5Q99683 1374 aa18.42■□□□□ 0.54
CLIP1-216ENST00000541410 KIF1AQ12756 1690 aa18.42■□□□□ 0.54
CLIP1-216ENST00000541410 ZNF335Q9H4Z2 1342 aaPredicted RBP18.42■□□□□ 0.54
CLIP1-216ENST00000541410 ZBTB7BO15156 539 aaPredicted RBP18.41■□□□□ 0.54
CLIP1-216ENST00000541410 ARHGAP45Q92619 1136 aa18.41■□□□□ 0.54
CLIP1-216ENST00000541410 LGR6Q9HBX8 967 aa18.41■□□□□ 0.54
CLIP1-216ENST00000541410 LMTK3Q96Q04 1460 aa18.41■□□□□ 0.54
CLIP1-216ENST00000541410 STRCQ7RTU9 1775 aa18.41■□□□□ 0.54
CLIP1-216ENST00000541410 SLC4A2P04920 1241 aa18.41■□□□□ 0.54
CLIP1-216ENST00000541410 FAM161AQ3B820 660 aa18.41■□□□□ 0.54
CLIP1-216ENST00000541410 CADPS2Q86UW7 1296 aa18.41■□□□□ 0.54
CLIP1-216ENST00000541410 USP19O94966 1318 aa18.41■□□□□ 0.54
CLIP1-216ENST00000541410 SLIT3O75094 1523 aa18.4■□□□□ 0.54
CLIP1-216ENST00000541410 ABCC4O15439 1325 aa18.4■□□□□ 0.54
CLIP1-216ENST00000541410 XIRP1Q702N8 1843 aaKnown RBP18.4■□□□□ 0.54
CLIP1-216ENST00000541410 KIAA0232Q92628 1395 aa18.39■□□□□ 0.54
CLIP1-216ENST00000541410 G2E3Q7L622 706 aa18.39■□□□□ 0.53
CLIP1-216ENST00000541410 MED1Q15648 1581 aaPredicted RBP18.39■□□□□ 0.53
CLIP1-216ENST00000541410 CHRNA2Q15822 529 aa18.38■□□□□ 0.53
CLIP1-216ENST00000541410 MPRIPQ6WCQ1 1025 aa18.38■□□□□ 0.53
CLIP1-216ENST00000541410 API5Q9BZZ5 524 aaKnown RBP18.38■□□□□ 0.53
CLIP1-216ENST00000541410 ALS2Q96Q42 1657 aa18.38■□□□□ 0.53
CLIP1-216ENST00000541410 ZNF530Q6P9A1 599 aaPredicted RBP18.38■□□□□ 0.53
CLIP1-216ENST00000541410 HTATSF1O43719 755 aaKnown RBP18.37■□□□□ 0.53
CLIP1-216ENST00000541410 HDAC1Q13547 482 aaPredicted RBP18.37■□□□□ 0.53
CLIP1-216ENST00000541410 BCL11AQ9H165 835 aa18.37■□□□□ 0.53
CLIP1-216ENST00000541410 F6X3S4 739 aa18.37■□□□□ 0.53
CLIP1-216ENST00000541410 TAF7Q15545 349 aaPredicted RBP18.37■□□□□ 0.53
CLIP1-216ENST00000541410 IPO9Q96P70 1041 aaKnown RBP18.36■□□□□ 0.53
CLIP1-216ENST00000541410 PHRF1Q9P1Y6 1649 aaKnown RBP18.36■□□□□ 0.53
CLIP1-216ENST00000541410 ERICH6Q7L0X2 663 aa18.35■□□□□ 0.53
CLIP1-216ENST00000541410 NPHP3Q7Z494 1330 aa18.35■□□□□ 0.53
CLIP1-216ENST00000541410 LRRC37A3O60309 1634 aa18.35■□□□□ 0.53
CLIP1-216ENST00000541410 RGS12O14924 1447 aa18.34■□□□□ 0.53
CLIP1-216ENST00000541410 DCCP43146 1447 aa18.34■□□□□ 0.53
CLIP1-216ENST00000541410 SLC4A10Q6U841 1118 aa18.34■□□□□ 0.53
CLIP1-216ENST00000541410 PXDNQ92626 1479 aa18.34■□□□□ 0.53
CLIP1-216ENST00000541410 KCNQ3O43525 872 aa18.34■□□□□ 0.53
CLIP1-216ENST00000541410 BRINP3Q76B58 766 aa18.34■□□□□ 0.53
CLIP1-216ENST00000541410 NLRP2Q9NX02 1062 aa18.34■□□□□ 0.53
CLIP1-216ENST00000541410 ERBB3P21860 1342 aa18.33■□□□□ 0.53
CLIP1-216ENST00000541410 HAP1P54257 671 aaPredicted RBP18.33■□□□□ 0.53
CLIP1-216ENST00000541410 PLEKHO1Q53GL0 409 aaPredicted RBP18.33■□□□□ 0.52
CLIP1-216ENST00000541410 SIRT2Q8IXJ6 389 aa18.33■□□□□ 0.52
CLIP1-216ENST00000541410 SEC24BO95487 1268 aa18.32■□□□□ 0.52
CLIP1-216ENST00000541410 LNPKQ9C0E8 428 aa18.32■□□□□ 0.52
CLIP1-216ENST00000541410 SMC5Q8IY18 1101 aa18.32■□□□□ 0.52
CLIP1-216ENST00000541410 CSB-PGBD3P0DP91 1061 aa18.31■□□□□ 0.52
CLIP1-216ENST00000541410 NOP58Q9Y2X3 529 aaKnown RBP18.31■□□□□ 0.52
CLIP1-216ENST00000541410 NCOA3Q9Y6Q9 1424 aa18.31■□□□□ 0.52
CLIP1-216ENST00000541410 VIRMAQ69YN4 1812 aaKnown RBP18.31■□□□□ 0.52
CLIP1-216ENST00000541410 EIF2S2P20042 333 aaKnown RBP18.31■□□□□ 0.52
CLIP1-216ENST00000541410 C1orf141Q5JVX7 400 aa18.31■□□□□ 0.52
CLIP1-216ENST00000541410 STK31Q9BXU1 1019 aa18.31■□□□□ 0.52
CLIP1-216ENST00000541410 TEFQ10587 303 aa18.3■□□□□ 0.52
CLIP1-216ENST00000541410 AKAP4Q5JQC9 854 aa18.3■□□□□ 0.52
CLIP1-216ENST00000541410 INTS3Q68E01 1043 aaKnown RBP18.3■□□□□ 0.52
CLIP1-216ENST00000541410 TNS3Q68CZ2 1445 aa18.3■□□□□ 0.52
CLIP1-216ENST00000541410 CEMIPQ8WUJ3 1361 aa18.3■□□□□ 0.52
CLIP1-216ENST00000541410 SPATA31A3Q5VYP0 1347 aa18.3■□□□□ 0.52
CLIP1-216ENST00000541410 MEIS3Q99687 375 aa18.3■□□□□ 0.52
CLIP1-216ENST00000541410 SLAIN2Q9P270 581 aa18.29■□□□□ 0.52
CLIP1-216ENST00000541410 ZBTB47Q9UFB7 747 aaPredicted RBP18.29■□□□□ 0.52
CLIP1-216ENST00000541410 PTPRCP08575 1304 aa18.29■□□□□ 0.52
CLIP1-216ENST00000541410 ANKRD45Q5TZF3 282 aa18.28■□□□□ 0.52
CLIP1-216ENST00000541410 ANP32EQ9BTT0 268 aa18.28■□□□□ 0.52
CLIP1-216ENST00000541410 BTBD11A6QL63 1104 aa18.28■□□□□ 0.52
CLIP1-216ENST00000541410 FKBP5Q13451 457 aaPredicted RBP18.28■□□□□ 0.52
CLIP1-216ENST00000541410 CCDC30Q5VVM6 783 aa18.28■□□□□ 0.52
CLIP1-216ENST00000541410 RNMTO43148 476 aaKnown RBP18.27■□□□□ 0.52
CLIP1-216ENST00000541410 AMOTQ4VCS5 1084 aa18.27■□□□□ 0.52
CLIP1-216ENST00000541410 FLIIQ13045 1269 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms