RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 LMOD3Q0VAK6 560 aa15.67■□□□□ 0.1
SFSWAP-208ENST00000539506 TOPAZ1Q8N9V7 1692 aa15.67■□□□□ 0.1
SFSWAP-208ENST00000539506 USP6P35125 1406 aa15.66■□□□□ 0.1
SFSWAP-208ENST00000539506 HSP90AA2PQ14568 343 aaPredicted RBP15.66■□□□□ 0.1
SFSWAP-208ENST00000539506 RGS12O14924 1447 aa15.66■□□□□ 0.1
SFSWAP-208ENST00000539506 NCLP19338 710 aaKnown RBP15.66■□□□□ 0.1
SFSWAP-208ENST00000539506 BMP2KLQ5H9B9 411 aa15.66■□□□□ 0.1
SFSWAP-208ENST00000539506 GCC1Q96CN9 775 aa15.66■□□□□ 0.1
SFSWAP-208ENST00000539506 TRIM44Q96DX7 344 aaPredicted RBP15.66■□□□□ 0.1
SFSWAP-208ENST00000539506 PLEKHG1Q9ULL1 1385 aa15.65■□□□□ 0.1
SFSWAP-208ENST00000539506 CHL1O00533 1208 aa15.65■□□□□ 0.1
SFSWAP-208ENST00000539506 SSH2Q76I76 1423 aa15.65■□□□□ 0.1
SFSWAP-208ENST00000539506 FOXO3O43524 673 aa15.65■□□□□ 0.1
SFSWAP-208ENST00000539506 KIF2CQ99661 725 aa15.65■□□□□ 0.1
SFSWAP-208ENST00000539506 RBM25P49756 843 aaKnown RBP15.64■□□□□ 0.09
SFSWAP-208ENST00000539506 MIS18AQ9NYP9 233 aa15.64■□□□□ 0.09
SFSWAP-208ENST00000539506 ESPNB1AK53 854 aa15.63■□□□□ 0.09
SFSWAP-208ENST00000539506 USP31Q70CQ4 1352 aa15.63■□□□□ 0.09
SFSWAP-208ENST00000539506 APBB1O00213 710 aa15.63■□□□□ 0.09
SFSWAP-208ENST00000539506 MRE11P49959 708 aa15.63■□□□□ 0.09
SFSWAP-208ENST00000539506 CHAMP1Q96JM3 812 aa15.63■□□□□ 0.09
SFSWAP-208ENST00000539506 API5Q9BZZ5 524 aaKnown RBP15.63■□□□□ 0.09
SFSWAP-208ENST00000539506 RGPD1P0DJD0 1748 aa15.63■□□□□ 0.09
SFSWAP-208ENST00000539506 CLCN1P35523 988 aa15.63■□□□□ 0.09
SFSWAP-208ENST00000539506 MAP3K19Q56UN5 1328 aa15.62■□□□□ 0.09
SFSWAP-208ENST00000539506 PLPPR3Q6T4P5 718 aa15.62■□□□□ 0.09
SFSWAP-208ENST00000539506 AMOTL2Q9Y2J4 779 aa15.62■□□□□ 0.09
SFSWAP-208ENST00000539506 NALCNQ8IZF0 1738 aa15.62■□□□□ 0.09
SFSWAP-208ENST00000539506 CRB1P82279 1406 aa15.62■□□□□ 0.09
SFSWAP-208ENST00000539506 SSFA2P28290 1259 aa15.61■□□□□ 0.09
SFSWAP-208ENST00000539506 FOXD4L5Q5VV16 416 aaPredicted RBP15.61■□□□□ 0.09
SFSWAP-208ENST00000539506 INTS3Q68E01 1043 aaKnown RBP15.61■□□□□ 0.09
SFSWAP-208ENST00000539506 TBC1D9Q6ZT07 1266 aa15.61■□□□□ 0.09
SFSWAP-208ENST00000539506 C16orf71Q8IYS4 520 aaPredicted RBP15.61■□□□□ 0.09
SFSWAP-208ENST00000539506 FOXD4L4Q8WXT5 416 aaPredicted RBP15.61■□□□□ 0.09
SFSWAP-208ENST00000539506 GSPT1P15170 499 aaKnown RBP15.61■□□□□ 0.09
SFSWAP-208ENST00000539506 ZMYND15Q9H091 742 aa15.61■□□□□ 0.09
SFSWAP-208ENST00000539506 TPRNQ4KMQ1 711 aa15.61■□□□□ 0.09
SFSWAP-208ENST00000539506 RIMS1Q86UR5 1692 aaKnown RBP15.6■□□□□ 0.09
SFSWAP-208ENST00000539506 ATP10DQ9P241 1426 aa15.6■□□□□ 0.09
SFSWAP-208ENST00000539506 MTHFSDQ2M296 383 aaKnown RBP15.6■□□□□ 0.09
SFSWAP-208ENST00000539506 DDIT3P35638 169 aa15.59■□□□□ 0.09
SFSWAP-208ENST00000539506 CHMP4BQ9H444 224 aaKnown RBP15.59■□□□□ 0.09
SFSWAP-208ENST00000539506 RBM10P98175 930 aaKnown RBP15.59■□□□□ 0.09
SFSWAP-208ENST00000539506 PLEKHM2Q8IWE5 1019 aa15.59■□□□□ 0.09
SFSWAP-208ENST00000539506 OTUD7AQ8TE49 926 aaPredicted RBP15.59■□□□□ 0.09
SFSWAP-208ENST00000539506 DCTPP1Q9H773 170 aa15.59■□□□□ 0.09
SFSWAP-208ENST00000539506 PKNOX2Q96KN3 472 aa15.58■□□□□ 0.08
SFSWAP-208ENST00000539506 NCOA3Q9Y6Q9 1424 aa15.58■□□□□ 0.08
SFSWAP-208ENST00000539506 MSH6P52701 1360 aa15.57■□□□□ 0.08
SFSWAP-208ENST00000539506 KIF24Q5T7B8 1368 aa15.57■□□□□ 0.08
SFSWAP-208ENST00000539506 KIAA0232Q92628 1395 aa15.57■□□□□ 0.08
SFSWAP-208ENST00000539506 G2E3Q7L622 706 aa15.57■□□□□ 0.08
SFSWAP-208ENST00000539506 GAS2L2Q8NHY3 880 aa15.57■□□□□ 0.08
SFSWAP-208ENST00000539506 MEIS3Q99687 375 aa15.57■□□□□ 0.08
SFSWAP-208ENST00000539506 RGPD8O14715 1765 aaPredicted RBP15.57■□□□□ 0.08
SFSWAP-208ENST00000539506 DDX11L8A8MPP1 907 aa15.57■□□□□ 0.08
SFSWAP-208ENST00000539506 CEP85Q6P2H3 762 aa15.57■□□□□ 0.08
SFSWAP-208ENST00000539506 EYA1Q99502 592 aa15.57■□□□□ 0.08
SFSWAP-208ENST00000539506 CEP170BQ9Y4F5 1589 aaPredicted RBP15.56■□□□□ 0.08
SFSWAP-208ENST00000539506 SLC4A2P04920 1241 aa15.56■□□□□ 0.08
SFSWAP-208ENST00000539506 SNX21Q969T3 373 aa15.56■□□□□ 0.08
SFSWAP-208ENST00000539506 ANKRD44Q8N8A2 993 aa15.56■□□□□ 0.08
SFSWAP-208ENST00000539506 RTL1A6NKG5 1358 aa15.55■□□□□ 0.08
SFSWAP-208ENST00000539506 SMARCA5O60264 1052 aaPredicted RBP15.55■□□□□ 0.08
SFSWAP-208ENST00000539506 DDX49Q9Y6V7 483 aaKnown RBP15.55■□□□□ 0.08
SFSWAP-208ENST00000539506 ARHGEF10O15013 1369 aa15.55■□□□□ 0.08
SFSWAP-208ENST00000539506 PKP1Q13835 747 aa15.54■□□□□ 0.08
SFSWAP-208ENST00000539506 MPNDQ8N594 471 aa15.54■□□□□ 0.08
SFSWAP-208ENST00000539506 EID1Q9Y6B2 187 aa15.54■□□□□ 0.08
SFSWAP-208ENST00000539506 F6X3S4 739 aa15.54■□□□□ 0.08
SFSWAP-208ENST00000539506 NUTM2GQ5VZR2 741 aa15.54■□□□□ 0.08
SFSWAP-208ENST00000539506 TBX22Q9Y458 520 aa15.54■□□□□ 0.08
SFSWAP-208ENST00000539506 ARHGAP23Q9P227 1491 aa15.54■□□□□ 0.08
SFSWAP-208ENST00000539506 MCTP1Q6DN14 999 aa15.54■□□□□ 0.08
SFSWAP-208ENST00000539506 NGDNQ8NEJ9 315 aaKnown RBP15.54■□□□□ 0.08
SFSWAP-208ENST00000539506 SLIT1O75093 1534 aa15.53■□□□□ 0.08
SFSWAP-208ENST00000539506 KDRP35968 1356 aa15.53■□□□□ 0.08
SFSWAP-208ENST00000539506 FOXD4L6Q3SYB3 417 aaPredicted RBP15.53■□□□□ 0.08
SFSWAP-208ENST00000539506 FOXD4L3Q6VB84 417 aaPredicted RBP15.53■□□□□ 0.08
SFSWAP-208ENST00000539506 TTC21AQ8NDW8 1320 aa15.53■□□□□ 0.08
SFSWAP-208ENST00000539506 SBNO1A3KN83 1393 aa15.53■□□□□ 0.08
SFSWAP-208ENST00000539506 DIP2AQ14689 1571 aa15.53■□□□□ 0.08
SFSWAP-208ENST00000539506 FLT4P35916 1363 aa15.53■□□□□ 0.08
SFSWAP-208ENST00000539506 PIK3C2AO00443 1686 aa15.53■□□□□ 0.08
SFSWAP-208ENST00000539506 GBP4Q96PP9 640 aa15.52■□□□□ 0.08
SFSWAP-208ENST00000539506 TTC22Q5TAA0 569 aa15.52■□□□□ 0.08
SFSWAP-208ENST00000539506 TSPYL4Q9UJ04 414 aa15.52■□□□□ 0.08
SFSWAP-208ENST00000539506 PTPRCP08575 1304 aa15.52■□□□□ 0.07
SFSWAP-208ENST00000539506 IGSF1Q8N6C5 1336 aa15.52■□□□□ 0.07
SFSWAP-208ENST00000539506 GLIPR1L2Q4G1C9 344 aa15.52■□□□□ 0.07
SFSWAP-208ENST00000539506 FMN2Q9NZ56 1722 aa15.52■□□□□ 0.07
SFSWAP-208ENST00000539506 CDC45O75419 566 aa15.51■□□□□ 0.07
SFSWAP-208ENST00000539506 CAVIN1Q6NZI2 390 aaKnown RBP15.51■□□□□ 0.07
SFSWAP-208ENST00000539506 KIAA1211Q6ZU35 1233 aa15.51■□□□□ 0.07
SFSWAP-208ENST00000539506 RPAP2Q8IXW5 612 aaPredicted RBP15.51■□□□□ 0.07
SFSWAP-208ENST00000539506 NASPP49321 788 aaPredicted RBP15.5■□□□□ 0.07
SFSWAP-208ENST00000539506 AMPHP49418 695 aa15.5■□□□□ 0.07
SFSWAP-208ENST00000539506 RBM27Q9P2N5 1060 aaKnown RBP15.5■□□□□ 0.07
SFSWAP-208ENST00000539506 KCNA6P17658 529 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms