RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 OCLNQ16625 522 aa12.52□□□□□ -0.41
NUP54-215ENST00000514313 C1orf216Q8TAB5 229 aa12.52□□□□□ -0.41
NUP54-215ENST00000514313 SIRT1Q96EB6 747 aa12.52□□□□□ -0.41
NUP54-215ENST00000514313 PRIMPOLQ96LW4 560 aa12.52□□□□□ -0.41
NUP54-215ENST00000514313 PLA2G2CQ5R387 149 aa12.51□□□□□ -0.41
NUP54-215ENST00000514313 KCTD15Q96SI1 283 aaPredicted RBP12.51□□□□□ -0.41
NUP54-215ENST00000514313 CXXC1Q9P0U4 656 aaPredicted RBP12.51□□□□□ -0.41
NUP54-215ENST00000514313 RNF223E7ERA6 249 aa12.5□□□□□ -0.41
NUP54-215ENST00000514313 ZBTB24O43167 697 aaPredicted RBP12.5□□□□□ -0.41
NUP54-215ENST00000514313 LGR5O75473 907 aa12.5□□□□□ -0.41
NUP54-215ENST00000514313 INTS6LQ5JSJ4 861 aaKnown RBP12.5□□□□□ -0.41
NUP54-215ENST00000514313 CDAN1Q8IWY9 1227 aa12.5□□□□□ -0.41
NUP54-215ENST00000514313 SKOR1P84550 965 aa12.49□□□□□ -0.41
NUP54-215ENST00000514313 CCDC125Q86Z20 511 aa12.49□□□□□ -0.41
NUP54-215ENST00000514313 SCTRP47872 440 aa12.48□□□□□ -0.41
NUP54-215ENST00000514313 AMOTL2Q9Y2J4 779 aa12.48□□□□□ -0.41
NUP54-215ENST00000514313 MAP4K5Q9Y4K4 846 aa12.48□□□□□ -0.41
NUP54-215ENST00000514313 VARSP26640 1264 aaKnown RBP12.47□□□□□ -0.41
NUP54-215ENST00000514313 VASH1Q7L8A9 365 aaPredicted RBP12.47□□□□□ -0.41
NUP54-215ENST00000514313 ANKLE1Q8NAG6 615 aa12.47□□□□□ -0.41
NUP54-215ENST00000514313 WNT7BP56706 349 aa12.46□□□□□ -0.41
NUP54-215ENST00000514313 KCNC4Q03721 635 aa12.46□□□□□ -0.41
NUP54-215ENST00000514313 TAS1R3Q7RTX0 852 aa12.46□□□□□ -0.41
NUP54-215ENST00000514313 ERVH48-1M5A8F1 160 aa12.45□□□□□ -0.42
NUP54-215ENST00000514313 ITGBL1O95965 494 aaPredicted RBP12.45□□□□□ -0.42
NUP54-215ENST00000514313 MYCP01106 439 aaPredicted RBP12.45□□□□□ -0.42
NUP54-215ENST00000514313 TSEN2Q8NCE0 465 aaKnown RBP12.45□□□□□ -0.42
NUP54-215ENST00000514313 HINFPQ9BQA5 517 aa12.45□□□□□ -0.42
NUP54-215ENST00000514313 DNAJC14Q6Y2X3 702 aaPredicted RBP12.43□□□□□ -0.42
NUP54-215ENST00000514313 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.43□□□□□ -0.42
NUP54-215ENST00000514313 ZNF211Q13398 564 aaPredicted RBP12.42□□□□□ -0.42
NUP54-215ENST00000514313 BIN2Q9UBW5 565 aaPredicted RBP12.42□□□□□ -0.42
NUP54-215ENST00000514313 M0R2N6 131 aa12.41□□□□□ -0.42
NUP54-215ENST00000514313 ABL1P00519 1130 aa12.41□□□□□ -0.42
NUP54-215ENST00000514313 GGCXP38435 758 aa12.41□□□□□ -0.42
NUP54-215ENST00000514313 ERVK-9P63128 1117 aa12.41□□□□□ -0.42
NUP54-215ENST00000514313 MKNK1Q9BUB5 465 aa12.41□□□□□ -0.42
NUP54-215ENST00000514313 ZNF358Q9NW07 568 aa12.41□□□□□ -0.42
NUP54-215ENST00000514313 FSHRP23945 695 aa12.4□□□□□ -0.42
NUP54-215ENST00000514313 WEE1P30291 646 aa12.4□□□□□ -0.42
NUP54-215ENST00000514313 ARID5BQ14865 1188 aa12.4□□□□□ -0.42
NUP54-215ENST00000514313 NOM1Q5C9Z4 860 aaKnown RBP12.4□□□□□ -0.42
NUP54-215ENST00000514313 EHBP1Q8NDI1 1231 aa12.4□□□□□ -0.42
NUP54-215ENST00000514313 EGFL7Q9UHF1 273 aa12.4□□□□□ -0.42
NUP54-215ENST00000514313 TMEM229AB2RXF0 380 aa12.39□□□□□ -0.43
NUP54-215ENST00000514313 H3BRB1 525 aa12.39□□□□□ -0.43
NUP54-215ENST00000514313 FKBP5Q13451 457 aaPredicted RBP12.39□□□□□ -0.43
NUP54-215ENST00000514313 CC2D2BQ6DHV5 1058 aa12.39□□□□□ -0.43
NUP54-215ENST00000514313 TUT1Q9H6E5 874 aaKnown RBP12.39□□□□□ -0.43
NUP54-215ENST00000514313 TMPRSS4Q9NRS4 437 aa12.39□□□□□ -0.43
NUP54-215ENST00000514313 SEPT3Q9UH03 358 aa12.39□□□□□ -0.43
NUP54-215ENST00000514313 E9PSI1 815 aa12.38□□□□□ -0.43
NUP54-215ENST00000514313 STAU1O95793 577 aaKnown RBP12.38□□□□□ -0.43
NUP54-215ENST00000514313 RPIAP49247 311 aa12.38□□□□□ -0.43
NUP54-215ENST00000514313 PURBQ96QR8 312 aaKnown RBP12.38□□□□□ -0.43
NUP54-215ENST00000514313 OSBPL3Q9H4L5 887 aa12.38□□□□□ -0.43
NUP54-215ENST00000514313 ANO2Q9NQ90 1003 aa12.38□□□□□ -0.43
NUP54-215ENST00000514313 CYLDQ9NQC7 956 aa12.38□□□□□ -0.43
NUP54-215ENST00000514313 TLL2Q9Y6L7 1015 aa12.38□□□□□ -0.43
NUP54-215ENST00000514313 SCNN1DP51172 638 aa12.37□□□□□ -0.43
NUP54-215ENST00000514313 MARSP56192 900 aaKnown RBP12.37□□□□□ -0.43
NUP54-215ENST00000514313 CAPN12Q6ZSI9 719 aa12.37□□□□□ -0.43
NUP54-215ENST00000514313 GAS2L2Q8NHY3 880 aa12.37□□□□□ -0.43
NUP54-215ENST00000514313 CDK15Q96Q40 435 aa12.37□□□□□ -0.43
NUP54-215ENST00000514313 HCSTQ9UBK5 93 aa12.37□□□□□ -0.43
NUP54-215ENST00000514313 RC3H1Q5TC82 1133 aaKnown RBP12.36□□□□□ -0.43
NUP54-215ENST00000514313 PPP1R18Q6NYC8 613 aa12.36□□□□□ -0.43
NUP54-215ENST00000514313 ICMTO60725 284 aa12.35□□□□□ -0.43
NUP54-215ENST00000514313 GDF10P55107 478 aa12.35□□□□□ -0.43
NUP54-215ENST00000514313 GTF3C2Q8WUA4 911 aaPredicted RBP12.35□□□□□ -0.43
NUP54-215ENST00000514313 ESF1Q9H501 851 aaKnown RBP12.35□□□□□ -0.43
NUP54-215ENST00000514313 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.35□□□□□ -0.43
NUP54-215ENST00000514313 ERCC3P19447 782 aa12.34□□□□□ -0.43
NUP54-215ENST00000514313 GRM5P41594 1212 aa12.34□□□□□ -0.43
NUP54-215ENST00000514313 GLYCTKQ8IVS8 523 aa12.34□□□□□ -0.43
NUP54-215ENST00000514313 ZNF784Q8NCA9 323 aaPredicted RBP12.34□□□□□ -0.43
NUP54-215ENST00000514313 DNMT3AQ9Y6K1 912 aaPredicted RBP12.34□□□□□ -0.43
NUP54-215ENST00000514313 RBM47A0AV96 593 aaKnown RBP12.33□□□□□ -0.44
NUP54-215ENST00000514313 UNCXA6NJT0 531 aa12.33□□□□□ -0.44
NUP54-215ENST00000514313 WASLO00401 505 aaPredicted RBP12.32□□□□□ -0.44
NUP54-215ENST00000514313 C21orf2O43822 256 aa12.32□□□□□ -0.44
NUP54-215ENST00000514313 IGFBP4P22692 258 aa12.32□□□□□ -0.44
NUP54-215ENST00000514313 DHX9Q08211 1270 aaKnown RBP12.32□□□□□ -0.44
NUP54-215ENST00000514313 MTMR3Q13615 1198 aa12.31□□□□□ -0.44
NUP54-215ENST00000514313 TNS4Q8IZW8 715 aa12.31□□□□□ -0.44
NUP54-215ENST00000514313 RNF166Q96A37 237 aaPredicted RBP12.31□□□□□ -0.44
NUP54-215ENST00000514313 ETNK1Q9HBU6 452 aa12.31□□□□□ -0.44
NUP54-215ENST00000514313 PTCD1O75127 700 aaKnown RBP12.3□□□□□ -0.44
NUP54-215ENST00000514313 CD2BP2O95400 341 aaKnown RBP12.3□□□□□ -0.44
NUP54-215ENST00000514313 LIAT1Q6ZQX7 453 aa12.3□□□□□ -0.44
NUP54-215ENST00000514313 CCDC116Q8IYX3 515 aa12.3□□□□□ -0.44
NUP54-215ENST00000514313 EMID1Q96A84 441 aaPredicted RBP12.3□□□□□ -0.44
NUP54-215ENST00000514313 SERTAD1Q9UHV2 236 aa12.3□□□□□ -0.44
NUP54-215ENST00000514313 BACH1O14867 736 aa12.29□□□□□ -0.44
NUP54-215ENST00000514313 SIAH2O43255 324 aa12.29□□□□□ -0.44
NUP54-215ENST00000514313 FOXO3O43524 673 aa12.29□□□□□ -0.44
NUP54-215ENST00000514313 LILRA1O75019 489 aa12.29□□□□□ -0.44
NUP54-215ENST00000514313 ADH1CP00326 375 aa12.29□□□□□ -0.44
NUP54-215ENST00000514313 INHAP05111 366 aa12.29□□□□□ -0.44
NUP54-215ENST00000514313 EPHA4P54764 986 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms