RNA–Protein interactions for RNA: ENST00000489048.1

NEB-215, Transcript of nebulin, humanhuman

TSL 1 (best)

Gene NEB, Length 2,738 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEB-215ENST00000489048 NASPP49321 788 aaPredicted RBP13.55□□□□□ -0.24
NEB-215ENST00000489048 HAP1P54257 671 aaPredicted RBP13.55□□□□□ -0.24
NEB-215ENST00000489048 A2ML1A8K2U0 1454 aa13.55□□□□□ -0.24
NEB-215ENST00000489048 AKAP12Q02952 1782 aa13.54□□□□□ -0.24
NEB-215ENST00000489048 KIAA0232Q92628 1395 aa13.54□□□□□ -0.24
NEB-215ENST00000489048 DDX49Q9Y6V7 483 aaKnown RBP13.54□□□□□ -0.24
NEB-215ENST00000489048 TPM2P07951 284 aa13.54□□□□□ -0.24
NEB-215ENST00000489048 ELL2O00472 640 aaPredicted RBP13.53□□□□□ -0.24
NEB-215ENST00000489048 HS1BP3Q53T59 392 aa13.53□□□□□ -0.24
NEB-215ENST00000489048 LMBRD1Q9NUN5 540 aa13.53□□□□□ -0.24
NEB-215ENST00000489048 CPS1P31327 1500 aa13.53□□□□□ -0.24
NEB-215ENST00000489048 NRXN3Q9Y4C0 1643 aa13.53□□□□□ -0.24
NEB-215ENST00000489048 CEP85Q6P2H3 762 aa13.53□□□□□ -0.24
NEB-215ENST00000489048 ZSCAN30Q86W11 494 aa13.53□□□□□ -0.24
NEB-215ENST00000489048 RTL1A6NKG5 1358 aa13.52□□□□□ -0.24
NEB-215ENST00000489048 WASLO00401 505 aaPredicted RBP13.52□□□□□ -0.24
NEB-215ENST00000489048 NME9Q86XW9 330 aa13.52□□□□□ -0.24
NEB-215ENST00000489048 PTPRCP08575 1304 aa13.52□□□□□ -0.25
NEB-215ENST00000489048 WAPLQ7Z5K2 1190 aa13.52□□□□□ -0.25
NEB-215ENST00000489048 FBXO31Q5XUX0 539 aaPredicted RBP13.51□□□□□ -0.25
NEB-215ENST00000489048 CASC1Q6TDU7 716 aa13.51□□□□□ -0.25
NEB-215ENST00000489048 AGLP35573 1532 aa13.51□□□□□ -0.25
NEB-215ENST00000489048 SDSP20132 328 aa13.51□□□□□ -0.25
NEB-215ENST00000489048 ANP32BQ92688 251 aaKnown RBP13.51□□□□□ -0.25
NEB-215ENST00000489048 CHL1O00533 1208 aa13.5□□□□□ -0.25
NEB-215ENST00000489048 ST18O60284 1047 aa13.5□□□□□ -0.25
NEB-215ENST00000489048 COG3Q96JB2 828 aa13.5□□□□□ -0.25
NEB-215ENST00000489048 TECPR2O15040 1411 aa13.5□□□□□ -0.25
NEB-215ENST00000489048 FAM83GA6ND36 823 aa13.5□□□□□ -0.25
NEB-215ENST00000489048 HSP90AA2PQ14568 343 aaPredicted RBP13.5□□□□□ -0.25
NEB-215ENST00000489048 GLIPR1L2Q4G1C9 344 aa13.5□□□□□ -0.25
NEB-215ENST00000489048 MCTP1Q6DN14 999 aa13.5□□□□□ -0.25
NEB-215ENST00000489048 C16orf71Q8IYS4 520 aaPredicted RBP13.5□□□□□ -0.25
NEB-215ENST00000489048 SIRT1Q96EB6 747 aa13.5□□□□□ -0.25
NEB-215ENST00000489048 OSBPL3Q9H4L5 887 aa13.5□□□□□ -0.25
NEB-215ENST00000489048 ITSN1Q15811 1721 aa13.5□□□□□ -0.25
NEB-215ENST00000489048 MSH6P52701 1360 aa13.5□□□□□ -0.25
NEB-215ENST00000489048 ZSCAN23Q3MJ62 389 aa13.49□□□□□ -0.25
NEB-215ENST00000489048 PDLIM2Q96JY6 352 aa13.49□□□□□ -0.25
NEB-215ENST00000489048 REC8O95072 547 aa13.49□□□□□ -0.25
NEB-215ENST00000489048 TERF1P54274 439 aa13.49□□□□□ -0.25
NEB-215ENST00000489048 RGPD1P0DJD0 1748 aa13.49□□□□□ -0.25
NEB-215ENST00000489048 OTUD7AQ8TE49 926 aaPredicted RBP13.48□□□□□ -0.25
NEB-215ENST00000489048 ZRANB1Q9UGI0 708 aa13.48□□□□□ -0.25
NEB-215ENST00000489048 OFD1O75665 1012 aa13.48□□□□□ -0.25
NEB-215ENST00000489048 KCNA4P22459 653 aa13.48□□□□□ -0.25
NEB-215ENST00000489048 AK9Q5TCS8 1911 aa13.47□□□□□ -0.25
NEB-215ENST00000489048 DCTN1Q14203 1278 aa13.47□□□□□ -0.25
NEB-215ENST00000489048 STAG3Q9UJ98 1225 aa13.47□□□□□ -0.25
NEB-215ENST00000489048 ZDHHC9Q9Y397 364 aa13.47□□□□□ -0.25
NEB-215ENST00000489048 TUBGCP6Q96RT7 1819 aa13.47□□□□□ -0.25
NEB-215ENST00000489048 CAVIN1Q6NZI2 390 aaKnown RBP13.47□□□□□ -0.25
NEB-215ENST00000489048 NUDT16Q96DE0 195 aaKnown RBP13.47□□□□□ -0.25
NEB-215ENST00000489048 CRB1P82279 1406 aa13.46□□□□□ -0.25
NEB-215ENST00000489048 ERC2O15083 957 aa13.46□□□□□ -0.25
NEB-215ENST00000489048 PKP1Q13835 747 aa13.46□□□□□ -0.25
NEB-215ENST00000489048 RRS1Q15050 365 aaKnown RBP13.46□□□□□ -0.25
NEB-215ENST00000489048 CCDC61Q9Y6R9 512 aa13.46□□□□□ -0.25
NEB-215ENST00000489048 NALCNQ8IZF0 1738 aa13.46□□□□□ -0.26
NEB-215ENST00000489048 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.45□□□□□ -0.26
NEB-215ENST00000489048 ZGPATQ8N5A5 531 aaKnown RBP13.45□□□□□ -0.26
NEB-215ENST00000489048 GPT2Q8TD30 523 aa13.45□□□□□ -0.26
NEB-215ENST00000489048 IL17RAQ96F46 866 aa13.45□□□□□ -0.26
NEB-215ENST00000489048 RBSNQ9H1K0 784 aa13.45□□□□□ -0.26
NEB-215ENST00000489048 NOL7Q9UMY1 257 aaKnown RBP13.45□□□□□ -0.26
NEB-215ENST00000489048 ADAMTSL3P82987 1691 aa13.45□□□□□ -0.26
NEB-215ENST00000489048 HMMRO75330 724 aa13.45□□□□□ -0.26
NEB-215ENST00000489048 EIF4A2Q14240 407 aaKnown RBP13.45□□□□□ -0.26
NEB-215ENST00000489048 MEIS3Q99687 375 aa13.45□□□□□ -0.26
NEB-215ENST00000489048 OVOS2A0A0J9YW53 1432 aa13.45□□□□□ -0.26
NEB-215ENST00000489048 OVOS2Q6IE36 1432 aa13.45□□□□□ -0.26
NEB-215ENST00000489048 ZNF500O60304 480 aaPredicted RBP13.44□□□□□ -0.26
NEB-215ENST00000489048 MSNP26038 577 aaKnown RBP13.44□□□□□ -0.26
NEB-215ENST00000489048 MCM2P49736 904 aa13.44□□□□□ -0.26
NEB-215ENST00000489048 ARHGEF10O15013 1369 aa13.44□□□□□ -0.26
NEB-215ENST00000489048 METP08581 1390 aa13.44□□□□□ -0.26
NEB-215ENST00000489048 SALL3Q9BXA9 1300 aa13.44□□□□□ -0.26
NEB-215ENST00000489048 SMARCA5O60264 1052 aaPredicted RBP13.44□□□□□ -0.26
NEB-215ENST00000489048 TOPAZ1Q8N9V7 1692 aa13.44□□□□□ -0.26
NEB-215ENST00000489048 LRSAM1Q6UWE0 723 aa13.43□□□□□ -0.26
NEB-215ENST00000489048 KIAA1211Q6ZU35 1233 aa13.43□□□□□ -0.26
NEB-215ENST00000489048 CUL4AQ13619 759 aa13.43□□□□□ -0.26
NEB-215ENST00000489048 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.43□□□□□ -0.26
NEB-215ENST00000489048 PEAK1Q9H792 1746 aa13.43□□□□□ -0.26
NEB-215ENST00000489048 PRPF40AO75400 957 aaKnown RBP13.42□□□□□ -0.26
NEB-215ENST00000489048 PRIM1P49642 420 aaKnown RBP13.42□□□□□ -0.26
NEB-215ENST00000489048 PDE1AP54750 535 aa13.42□□□□□ -0.26
NEB-215ENST00000489048 KRT24Q2M2I5 525 aa13.42□□□□□ -0.26
NEB-215ENST00000489048 SULT6B1Q6IMI4 303 aa13.42□□□□□ -0.26
NEB-215ENST00000489048 AEBP1Q8IUX7 1158 aa13.42□□□□□ -0.26
NEB-215ENST00000489048 SSH2Q76I76 1423 aa13.42□□□□□ -0.26
NEB-215ENST00000489048 MBD3O95983 291 aa13.42□□□□□ -0.26
NEB-215ENST00000489048 MCM5P33992 734 aa13.42□□□□□ -0.26
NEB-215ENST00000489048 CCT4P50991 539 aaKnown RBP13.42□□□□□ -0.26
NEB-215ENST00000489048 USP31Q70CQ4 1352 aa13.42□□□□□ -0.26
NEB-215ENST00000489048 ANAPC15P60006 121 aa13.41□□□□□ -0.26
NEB-215ENST00000489048 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.41□□□□□ -0.26
NEB-215ENST00000489048 BRD1O95696 1058 aa13.41□□□□□ -0.26
NEB-215ENST00000489048 NCLP19338 710 aaKnown RBP13.41□□□□□ -0.26
NEB-215ENST00000489048 INTS4Q96HW7 963 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms