RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 RABEP1Q15276 862 aa14.19□□□□□ -0.14
NPHP4-204ENST00000460696 ZNF530Q6P9A1 599 aaPredicted RBP14.19□□□□□ -0.14
NPHP4-204ENST00000460696 CLTCL1P53675 1640 aa14.18□□□□□ -0.14
NPHP4-204ENST00000460696 GNAT3A8MTJ3 354 aa14.18□□□□□ -0.14
NPHP4-204ENST00000460696 MAP4K4O95819 1239 aaPredicted RBP14.18□□□□□ -0.14
NPHP4-204ENST00000460696 NEXNQ0ZGT2 675 aa14.18□□□□□ -0.14
NPHP4-204ENST00000460696 TBC1D9Q6ZT07 1266 aa14.18□□□□□ -0.14
NPHP4-204ENST00000460696 LRRCC1Q9C099 1032 aa14.18□□□□□ -0.14
NPHP4-204ENST00000460696 SYNMO15061 1565 aa14.18□□□□□ -0.14
NPHP4-204ENST00000460696 BMP2KLQ5H9B9 411 aa14.17□□□□□ -0.14
NPHP4-204ENST00000460696 SMC5Q8IY18 1101 aa14.17□□□□□ -0.14
NPHP4-204ENST00000460696 MEIS3Q99687 375 aa14.17□□□□□ -0.14
NPHP4-204ENST00000460696 TTC5Q8N0Z6 440 aa14.16□□□□□ -0.14
NPHP4-204ENST00000460696 TBX22Q9Y458 520 aa14.16□□□□□ -0.14
NPHP4-204ENST00000460696 ERC2O15083 957 aa14.16□□□□□ -0.14
NPHP4-204ENST00000460696 SRCIN1Q9C0H9 1055 aa14.16□□□□□ -0.14
NPHP4-204ENST00000460696 C16orf71Q8IYS4 520 aaPredicted RBP14.16□□□□□ -0.14
NPHP4-204ENST00000460696 SYAP1Q96A49 352 aaPredicted RBP14.16□□□□□ -0.14
NPHP4-204ENST00000460696 MYOM2P54296 1465 aa14.16□□□□□ -0.14
NPHP4-204ENST00000460696 G3BP1Q13283 466 aaKnown RBP eCLIP14.15□□□□□ -0.14
NPHP4-204ENST00000460696 TSHZ3Q63HK5 1081 aa14.15□□□□□ -0.14
NPHP4-204ENST00000460696 RIC3Q7Z5B4 369 aa14.15□□□□□ -0.14
NPHP4-204ENST00000460696 ARHGAP45Q92619 1136 aa14.15□□□□□ -0.14
NPHP4-204ENST00000460696 DDX58O95786 925 aaKnown RBP14.15□□□□□ -0.14
NPHP4-204ENST00000460696 PLEKHO1Q53GL0 409 aaPredicted RBP14.15□□□□□ -0.14
NPHP4-204ENST00000460696 GORABQ5T7V8 394 aa14.15□□□□□ -0.14
NPHP4-204ENST00000460696 SRGAP3O43295 1099 aa14.15□□□□□ -0.14
NPHP4-204ENST00000460696 ZRSR1Q15695 479 aaKnown RBP14.15□□□□□ -0.14
NPHP4-204ENST00000460696 TMEM94Q12767 1356 aa14.15□□□□□ -0.14
NPHP4-204ENST00000460696 CLASRPQ8N2M8 674 aaKnown RBP14.15□□□□□ -0.15
NPHP4-204ENST00000460696 IL13P35225 146 aa14.14□□□□□ -0.15
NPHP4-204ENST00000460696 TMEM2Q9UHN6 1383 aa14.14□□□□□ -0.15
NPHP4-204ENST00000460696 MRE11P49959 708 aa14.14□□□□□ -0.15
NPHP4-204ENST00000460696 CAVIN1Q6NZI2 390 aaKnown RBP14.14□□□□□ -0.15
NPHP4-204ENST00000460696 RBM42Q9BTD8 480 aaKnown RBP14.14□□□□□ -0.15
NPHP4-204ENST00000460696 RUFY2Q8WXA3 655 aa14.14□□□□□ -0.15
NPHP4-204ENST00000460696 PRPF40AO75400 957 aaKnown RBP14.13□□□□□ -0.15
NPHP4-204ENST00000460696 HSP90B1P14625 803 aaKnown RBP14.13□□□□□ -0.15
NPHP4-204ENST00000460696 TET3O43151 1660 aa14.13□□□□□ -0.15
NPHP4-204ENST00000460696 HSP90AB4PQ58FF6 505 aa14.13□□□□□ -0.15
NPHP4-204ENST00000460696 NUTM1Q86Y26 1132 aa14.13□□□□□ -0.15
NPHP4-204ENST00000460696 KIF1BO60333 1816 aa14.13□□□□□ -0.15
NPHP4-204ENST00000460696 ZBTB7BO15156 539 aaPredicted RBP14.13□□□□□ -0.15
NPHP4-204ENST00000460696 FLIIQ13045 1269 aa14.13□□□□□ -0.15
NPHP4-204ENST00000460696 TAF7Q15545 349 aaPredicted RBP14.12□□□□□ -0.15
NPHP4-204ENST00000460696 GLIPR1L2Q4G1C9 344 aa14.12□□□□□ -0.15
NPHP4-204ENST00000460696 ZKSCAN1P17029 563 aaPredicted RBP14.12□□□□□ -0.15
NPHP4-204ENST00000460696 TAF7LQ5H9L4 462 aa14.12□□□□□ -0.15
NPHP4-204ENST00000460696 PLEKHF1Q96S99 279 aa14.12□□□□□ -0.15
NPHP4-204ENST00000460696 E9PCH4 1651 aa14.11□□□□□ -0.15
NPHP4-204ENST00000460696 ANXA1P04083 346 aa14.11□□□□□ -0.15
NPHP4-204ENST00000460696 MTHFSDQ2M296 383 aaKnown RBP14.11□□□□□ -0.15
NPHP4-204ENST00000460696 LRRFIP2Q9Y608 721 aaKnown RBP14.11□□□□□ -0.15
NPHP4-204ENST00000460696 MLH3Q9UHC1 1453 aa14.11□□□□□ -0.15
NPHP4-204ENST00000460696 BTBD11A6QL63 1104 aa14.11□□□□□ -0.15
NPHP4-204ENST00000460696 MPRIPQ6WCQ1 1025 aa14.11□□□□□ -0.15
NPHP4-204ENST00000460696 UPF3BQ9BZI7 483 aaKnown RBP14.11□□□□□ -0.15
NPHP4-204ENST00000460696 SIL1Q9H173 461 aa14.1□□□□□ -0.15
NPHP4-204ENST00000460696 ZFYVE9O95405 1425 aa14.1□□□□□ -0.15
NPHP4-204ENST00000460696 MADDQ8WXG6 1647 aa14.1□□□□□ -0.15
NPHP4-204ENST00000460696 CNTROBQ8N137 903 aa14.1□□□□□ -0.15
NPHP4-204ENST00000460696 TNPO1Q92973 898 aaKnown RBP14.1□□□□□ -0.15
NPHP4-204ENST00000460696 NPHP3Q7Z494 1330 aa14.1□□□□□ -0.15
NPHP4-204ENST00000460696 EFCAB6Q5THR3 1501 aa14.1□□□□□ -0.15
NPHP4-204ENST00000460696 VPS37CA5D8V6 355 aaPredicted RBP14.1□□□□□ -0.15
NPHP4-204ENST00000460696 GTF2E1P29083 439 aaPredicted RBP14.1□□□□□ -0.15
NPHP4-204ENST00000460696 RNF214Q8ND24 703 aa14.1□□□□□ -0.15
NPHP4-204ENST00000460696 PTPRCP08575 1304 aa14.1□□□□□ -0.15
NPHP4-204ENST00000460696 CERKQ8TCT0 537 aa14.09□□□□□ -0.15
NPHP4-204ENST00000460696 MAP3K19Q56UN5 1328 aa14.09□□□□□ -0.15
NPHP4-204ENST00000460696 MAP3K4Q9Y6R4 1608 aa14.09□□□□□ -0.15
NPHP4-204ENST00000460696 MYL6BP14649 208 aa14.09□□□□□ -0.15
NPHP4-204ENST00000460696 MX1P20591 662 aa14.09□□□□□ -0.15
NPHP4-204ENST00000460696 SSFA2P28290 1259 aa14.09□□□□□ -0.15
NPHP4-204ENST00000460696 CIZ1Q9ULV3 898 aaPredicted RBP14.09□□□□□ -0.15
NPHP4-204ENST00000460696 SPHKAPQ2M3C7 1700 aa14.09□□□□□ -0.15
NPHP4-204ENST00000460696 LRRC59Q96AG4 307 aaKnown RBP14.09□□□□□ -0.15
NPHP4-204ENST00000460696 SMC3Q9UQE7 1217 aa14.09□□□□□ -0.15
NPHP4-204ENST00000460696 POLR1AO95602 1720 aaPredicted RBP14.09□□□□□ -0.15
NPHP4-204ENST00000460696 DRC7Q8IY82 874 aa14.08□□□□□ -0.15
NPHP4-204ENST00000460696 ANKRD44Q8N8A2 993 aa14.08□□□□□ -0.15
NPHP4-204ENST00000460696 NASPP49321 788 aaPredicted RBP14.08□□□□□ -0.16
NPHP4-204ENST00000460696 TTC22Q5TAA0 569 aa14.08□□□□□ -0.16
NPHP4-204ENST00000460696 SHROOM2Q13796 1616 aa14.08□□□□□ -0.16
NPHP4-204ENST00000460696 DIP2BQ9P265 1576 aa14.08□□□□□ -0.16
NPHP4-204ENST00000460696 SDSP20132 328 aa14.08□□□□□ -0.16
NPHP4-204ENST00000460696 EYA1Q99502 592 aa14.08□□□□□ -0.16
NPHP4-204ENST00000460696 FAM177BA6PVY3 158 aa14.07□□□□□ -0.16
NPHP4-204ENST00000460696 GRPEL1Q9HAV7 217 aa14.07□□□□□ -0.16
NPHP4-204ENST00000460696 CWC27Q6UX04 472 aaKnown RBP14.07□□□□□ -0.16
NPHP4-204ENST00000460696 G2E3Q7L622 706 aa14.07□□□□□ -0.16
NPHP4-204ENST00000460696 OTUD7AQ8TE49 926 aaPredicted RBP14.06□□□□□ -0.16
NPHP4-204ENST00000460696 NEUROD6Q96NK8 337 aa14.06□□□□□ -0.16
NPHP4-204ENST00000460696 FSD1Q9BTV5 496 aa14.06□□□□□ -0.16
NPHP4-204ENST00000460696 WWC3Q9ULE0 1092 aa14.06□□□□□ -0.16
NPHP4-204ENST00000460696 EDC4Q6P2E9 1401 aaKnown RBP14.06□□□□□ -0.16
NPHP4-204ENST00000460696 RNF17Q9BXT8 1623 aaKnown RBP14.06□□□□□ -0.16
NPHP4-204ENST00000460696 DCTPP1Q9H773 170 aa14.06□□□□□ -0.16
NPHP4-204ENST00000460696 ARID3AQ99856 593 aa14.05□□□□□ -0.16
NPHP4-204ENST00000460696 ATP6V1DQ9Y5K8 247 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms