RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 COG3Q96JB2 828 aa13.57□□□□□ -0.24
LIMS1-207ENST00000422797 ARXQ96QS3 562 aa13.57□□□□□ -0.24
LIMS1-207ENST00000422797 DDX49Q9Y6V7 483 aaKnown RBP13.57□□□□□ -0.24
LIMS1-207ENST00000422797 MAP2P11137 1827 aaKnown RBP13.57□□□□□ -0.24
LIMS1-207ENST00000422797 TECPR2O15040 1411 aa13.56□□□□□ -0.24
LIMS1-207ENST00000422797 ATP10DQ9P241 1426 aa13.56□□□□□ -0.24
LIMS1-207ENST00000422797 RAPGEF3O95398 923 aa13.56□□□□□ -0.24
LIMS1-207ENST00000422797 CYP2E1P05181 493 aaPredicted RBP13.56□□□□□ -0.24
LIMS1-207ENST00000422797 MCM2P49736 904 aa13.56□□□□□ -0.24
LIMS1-207ENST00000422797 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.56□□□□□ -0.24
LIMS1-207ENST00000422797 GAS2L2Q8NHY3 880 aa13.56□□□□□ -0.24
LIMS1-207ENST00000422797 A2ML1A8K2U0 1454 aa13.56□□□□□ -0.24
LIMS1-207ENST00000422797 ZSCAN30Q86W11 494 aa13.55□□□□□ -0.24
LIMS1-207ENST00000422797 PHACTR3Q96KR7 559 aa13.55□□□□□ -0.24
LIMS1-207ENST00000422797 USP26Q9BXU7 913 aa13.55□□□□□ -0.24
LIMS1-207ENST00000422797 STAG3Q9UJ98 1225 aa13.55□□□□□ -0.24
LIMS1-207ENST00000422797 WASLO00401 505 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-207ENST00000422797 GSPT1P15170 499 aaKnown RBP13.54□□□□□ -0.24
LIMS1-207ENST00000422797 SSFA2P28290 1259 aa13.54□□□□□ -0.24
LIMS1-207ENST00000422797 TSPYL6Q8N831 410 aa13.54□□□□□ -0.24
LIMS1-207ENST00000422797 C3P01024 1663 aa13.54□□□□□ -0.24
LIMS1-207ENST00000422797 AKAP12Q02952 1782 aa13.54□□□□□ -0.24
LIMS1-207ENST00000422797 CPS1P31327 1500 aa13.54□□□□□ -0.24
LIMS1-207ENST00000422797 ITSN1Q15811 1721 aa13.54□□□□□ -0.24
LIMS1-207ENST00000422797 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-207ENST00000422797 GAS2L3Q86XJ1 694 aa13.54□□□□□ -0.24
LIMS1-207ENST00000422797 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.54□□□□□ -0.24
LIMS1-207ENST00000422797 C1orf115Q9H7X2 142 aa13.54□□□□□ -0.24
LIMS1-207ENST00000422797 ARHGEF10O15013 1369 aa13.53□□□□□ -0.24
LIMS1-207ENST00000422797 DLG5Q8TDM6 1919 aa13.53□□□□□ -0.24
LIMS1-207ENST00000422797 EPB41L2O43491 1005 aaKnown RBP13.53□□□□□ -0.24
LIMS1-207ENST00000422797 CD2BP2O95400 341 aaKnown RBP13.53□□□□□ -0.24
LIMS1-207ENST00000422797 HMOX1P09601 288 aa13.53□□□□□ -0.24
LIMS1-207ENST00000422797 MCM5P33992 734 aa13.53□□□□□ -0.24
LIMS1-207ENST00000422797 OSBPL3Q9H4L5 887 aa13.53□□□□□ -0.24
LIMS1-207ENST00000422797 MBD3O95983 291 aa13.52□□□□□ -0.25
LIMS1-207ENST00000422797 MSNP26038 577 aaKnown RBP13.52□□□□□ -0.25
LIMS1-207ENST00000422797 HDGFP51858 240 aaKnown RBP13.52□□□□□ -0.25
LIMS1-207ENST00000422797 HSP90AA2PQ14568 343 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-207ENST00000422797 KLHL34Q8N239 644 aa13.52□□□□□ -0.25
LIMS1-207ENST00000422797 C8orf58Q8NAV2 365 aa13.52□□□□□ -0.25
LIMS1-207ENST00000422797 EMILIN1Q9Y6C2 1016 aa13.52□□□□□ -0.25
LIMS1-207ENST00000422797 RGS12O14924 1447 aa13.52□□□□□ -0.25
LIMS1-207ENST00000422797 RTL1A6NKG5 1358 aa13.51□□□□□ -0.25
LIMS1-207ENST00000422797 CHL1O00533 1208 aa13.51□□□□□ -0.25
LIMS1-207ENST00000422797 ERC2O15083 957 aa13.51□□□□□ -0.25
LIMS1-207ENST00000422797 CEP85Q6P2H3 762 aa13.51□□□□□ -0.25
LIMS1-207ENST00000422797 CCDC61Q9Y6R9 512 aa13.51□□□□□ -0.25
LIMS1-207ENST00000422797 SSH2Q76I76 1423 aa13.51□□□□□ -0.25
LIMS1-207ENST00000422797 SOS1Q07889 1333 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-207ENST00000422797 MCCP23508 829 aa13.5□□□□□ -0.25
LIMS1-207ENST00000422797 CCT4P50991 539 aaKnown RBP13.5□□□□□ -0.25
LIMS1-207ENST00000422797 TTC21BQ7Z4L5 1316 aa13.5□□□□□ -0.25
LIMS1-207ENST00000422797 ANAPC15P60006 121 aa13.49□□□□□ -0.25
LIMS1-207ENST00000422797 THUMPD2Q9BTF0 503 aaKnown RBP13.49□□□□□ -0.25
LIMS1-207ENST00000422797 LMBRD1Q9NUN5 540 aa13.49□□□□□ -0.25
LIMS1-207ENST00000422797 ERBB4Q15303 1308 aa13.49□□□□□ -0.25
LIMS1-207ENST00000422797 OFD1O75665 1012 aa13.49□□□□□ -0.25
LIMS1-207ENST00000422797 SDSP20132 328 aa13.49□□□□□ -0.25
LIMS1-207ENST00000422797 MCTP1Q6DN14 999 aa13.49□□□□□ -0.25
LIMS1-207ENST00000422797 RBM42Q9BTD8 480 aaKnown RBP13.49□□□□□ -0.25
LIMS1-207ENST00000422797 NRXN3Q9Y4C0 1643 aa13.48□□□□□ -0.25
LIMS1-207ENST00000422797 CSPP1Q1MSJ5 1256 aa13.48□□□□□ -0.25
LIMS1-207ENST00000422797 ZSCAN23Q3MJ62 389 aa13.48□□□□□ -0.25
LIMS1-207ENST00000422797 NME9Q86XW9 330 aa13.48□□□□□ -0.25
LIMS1-207ENST00000422797 SYAP1Q96A49 352 aaPredicted RBP13.48□□□□□ -0.25
LIMS1-207ENST00000422797 NUDT16Q96DE0 195 aaKnown RBP13.48□□□□□ -0.25
LIMS1-207ENST00000422797 IL17RAQ96F46 866 aa13.48□□□□□ -0.25
LIMS1-207ENST00000422797 PDLIM2Q96JY6 352 aa13.48□□□□□ -0.25
LIMS1-207ENST00000422797 MSH6P52701 1360 aa13.47□□□□□ -0.25
LIMS1-207ENST00000422797 INTS4Q96HW7 963 aaKnown RBP13.47□□□□□ -0.25
LIMS1-207ENST00000422797 MAP7D2Q96T17 732 aa13.47□□□□□ -0.25
LIMS1-207ENST00000422797 FOXD4L1Q9NU39 408 aa13.47□□□□□ -0.25
LIMS1-207ENST00000422797 AOX1Q06278 1338 aa13.47□□□□□ -0.25
LIMS1-207ENST00000422797 RGPD1P0DJD0 1748 aa13.47□□□□□ -0.25
LIMS1-207ENST00000422797 NALCNQ8IZF0 1738 aa13.47□□□□□ -0.25
LIMS1-207ENST00000422797 ELL2O00472 640 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-207ENST00000422797 ZNF500O60304 480 aaPredicted RBP13.46□□□□□ -0.25
LIMS1-207ENST00000422797 PHF14O94880 888 aa13.46□□□□□ -0.25
LIMS1-207ENST00000422797 SRCIN1Q9C0H9 1055 aa13.46□□□□□ -0.25
LIMS1-207ENST00000422797 NOL7Q9UMY1 257 aaKnown RBP13.46□□□□□ -0.25
LIMS1-207ENST00000422797 OVOS2A0A0J9YW53 1432 aa13.46□□□□□ -0.26
LIMS1-207ENST00000422797 OVOS2Q6IE36 1432 aa13.46□□□□□ -0.26
LIMS1-207ENST00000422797 TOPAZ1Q8N9V7 1692 aa13.45□□□□□ -0.26
LIMS1-207ENST00000422797 TSPOAP1O95153 1857 aa13.45□□□□□ -0.26
LIMS1-207ENST00000422797 CAVIN1Q6NZI2 390 aaKnown RBP13.44□□□□□ -0.26
LIMS1-207ENST00000422797 LRSAM1Q6UWE0 723 aa13.44□□□□□ -0.26
LIMS1-207ENST00000422797 WAPLQ7Z5K2 1190 aa13.44□□□□□ -0.26
LIMS1-207ENST00000422797 CCDC39Q9UFE4 941 aa13.44□□□□□ -0.26
LIMS1-207ENST00000422797 USP31Q70CQ4 1352 aa13.44□□□□□ -0.26
LIMS1-207ENST00000422797 CRB1P82279 1406 aa13.44□□□□□ -0.26
LIMS1-207ENST00000422797 PXDNLA1KZ92 1463 aa13.44□□□□□ -0.26
LIMS1-207ENST00000422797 HTATSF1O43719 755 aaKnown RBP13.44□□□□□ -0.26
LIMS1-207ENST00000422797 GNAI3P08754 354 aa13.44□□□□□ -0.26
LIMS1-207ENST00000422797 CUL4AQ13619 759 aa13.44□□□□□ -0.26
LIMS1-207ENST00000422797 FBXO31Q5XUX0 539 aaPredicted RBP13.44□□□□□ -0.26
LIMS1-207ENST00000422797 MTERF4Q7Z6M4 381 aaKnown RBP13.44□□□□□ -0.26
LIMS1-207ENST00000422797 PDCL3Q9H2J4 239 aa13.44□□□□□ -0.26
LIMS1-207ENST00000422797 GNAI2P04899 355 aa13.43□□□□□ -0.26
LIMS1-207ENST00000422797 NCLP19338 710 aaKnown RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms