RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 DPH6Q7L8W6 267 aa14.59□□□□□ -0.07
CHD3-203ENST00000380358 GIMAP7Q8NHV1 300 aa14.59□□□□□ -0.07
CHD3-203ENST00000380358 EPB41L2O43491 1005 aaKnown RBP14.59□□□□□ -0.07
CHD3-203ENST00000380358 TXNDC2Q86VQ3 553 aa14.59□□□□□ -0.07
CHD3-203ENST00000380358 TNIP1Q15025 636 aa14.59□□□□□ -0.07
CHD3-203ENST00000380358 LARP1Q6PKG0 1096 aaKnown RBP14.58□□□□□ -0.07
CHD3-203ENST00000380358 TRERF1Q96PN7 1200 aa14.58□□□□□ -0.08
CHD3-203ENST00000380358 SEC63Q9UGP8 760 aaKnown RBP14.58□□□□□ -0.08
CHD3-203ENST00000380358 HDGFL1Q5TGJ6 251 aa14.58□□□□□ -0.08
CHD3-203ENST00000380358 SAMM50Q9Y512 469 aa14.58□□□□□ -0.08
CHD3-203ENST00000380358 TSR2Q969E8 191 aaKnown RBP14.58□□□□□ -0.08
CHD3-203ENST00000380358 PPFIA3O75145 1194 aa14.57□□□□□ -0.08
CHD3-203ENST00000380358 LMAN1P49257 510 aa14.57□□□□□ -0.08
CHD3-203ENST00000380358 RGS22Q8NE09 1264 aa14.57□□□□□ -0.08
CHD3-203ENST00000380358 IL1RAPL2Q9NP60 686 aa14.57□□□□□ -0.08
CHD3-203ENST00000380358 ZPR1O75312 459 aa14.57□□□□□ -0.08
CHD3-203ENST00000380358 MIS18AQ9NYP9 233 aa14.57□□□□□ -0.08
CHD3-203ENST00000380358 CYP46A1Q9Y6A2 500 aa14.57□□□□□ -0.08
CHD3-203ENST00000380358 OTUD6BQ8N6M0 293 aa14.57□□□□□ -0.08
CHD3-203ENST00000380358 PRPF4BQ13523 1007 aaKnown RBP14.57□□□□□ -0.08
CHD3-203ENST00000380358 TNIKQ9UKE5 1360 aa14.56□□□□□ -0.08
CHD3-203ENST00000380358 LARP1BQ659C4 914 aaKnown RBP14.56□□□□□ -0.08
CHD3-203ENST00000380358 NOB1Q9ULX3 412 aaKnown RBP14.56□□□□□ -0.08
CHD3-203ENST00000380358 CCDC144CPQ8IYA2 1237 aa14.56□□□□□ -0.08
CHD3-203ENST00000380358 TRAK2O60296 914 aa14.56□□□□□ -0.08
CHD3-203ENST00000380358 ATXN8OSP0DMR3 200 aa14.56□□□□□ -0.08
CHD3-203ENST00000380358 CPLX3Q8WVH0 158 aa14.56□□□□□ -0.08
CHD3-203ENST00000380358 IGHMBP2P38935 993 aaKnown RBP14.56□□□□□ -0.08
CHD3-203ENST00000380358 RABEP1Q15276 862 aa14.56□□□□□ -0.08
CHD3-203ENST00000380358 KAT6BQ8WYB5 2073 aa14.56□□□□□ -0.08
CHD3-203ENST00000380358 PIP4K2AP48426 406 aaPredicted RBP14.55□□□□□ -0.08
CHD3-203ENST00000380358 PHLDB1Q86UU1 1377 aa14.55□□□□□ -0.08
CHD3-203ENST00000380358 GNAI2P04899 355 aa14.55□□□□□ -0.08
CHD3-203ENST00000380358 PRKAR2BP31323 418 aa14.55□□□□□ -0.08
CHD3-203ENST00000380358 FEZ1Q99689 392 aa14.55□□□□□ -0.08
CHD3-203ENST00000380358 IFFO1Q0D2I5 559 aa14.55□□□□□ -0.08
CHD3-203ENST00000380358 ZNF530Q6P9A1 599 aaPredicted RBP14.55□□□□□ -0.08
CHD3-203ENST00000380358 CCDC150Q8NCX0 1101 aa14.55□□□□□ -0.08
CHD3-203ENST00000380358 CACNA2D4Q7Z3S7 1137 aa14.54□□□□□ -0.08
CHD3-203ENST00000380358 ATP2B3Q16720 1220 aa14.54□□□□□ -0.08
CHD3-203ENST00000380358 JMYQ8N9B5 988 aa14.54□□□□□ -0.08
CHD3-203ENST00000380358 DACH1Q9UI36 760 aa14.54□□□□□ -0.08
CHD3-203ENST00000380358 SSX2IPQ9Y2D8 614 aa14.54□□□□□ -0.08
CHD3-203ENST00000380358 RANBP6O60518 1105 aaKnown RBP14.54□□□□□ -0.08
CHD3-203ENST00000380358 AIDAQ96BJ3 306 aa14.54□□□□□ -0.08
CHD3-203ENST00000380358 LARP6Q9BRS8 491 aaKnown RBP14.54□□□□□ -0.08
CHD3-203ENST00000380358 PRDM11Q9NQV5 511 aa14.54□□□□□ -0.08
CHD3-203ENST00000380358 SULT6B1Q6IMI4 303 aa14.54□□□□□ -0.08
CHD3-203ENST00000380358 HOOK3Q86VS8 718 aa14.54□□□□□ -0.08
CHD3-203ENST00000380358 ZNF622Q969S3 477 aaKnown RBP eCLIP14.54□□□□□ -0.081e-6■■■□□ 19.2
CHD3-203ENST00000380358 JAKMIP1Q96N16 626 aaKnown RBP14.54□□□□□ -0.08
CHD3-203ENST00000380358 METTL24Q5JXM2 366 aa14.54□□□□□ -0.08
CHD3-203ENST00000380358 TMCO4Q5TGY1 634 aa14.54□□□□□ -0.08
CHD3-203ENST00000380358 BTBD11A6QL63 1104 aa14.53□□□□□ -0.08
CHD3-203ENST00000380358 DZIP1Q86YF9 867 aaKnown RBP14.53□□□□□ -0.08
CHD3-203ENST00000380358 SOGA1O94964 1423 aa14.53□□□□□ -0.08
CHD3-203ENST00000380358 SMG6Q86US8 1419 aaKnown RBP14.53□□□□□ -0.08
CHD3-203ENST00000380358 CCP110O43303 1012 aa14.53□□□□□ -0.08
CHD3-203ENST00000380358 RNF187Q5TA31 235 aaPredicted RBP14.53□□□□□ -0.08
CHD3-203ENST00000380358 SLC26A8Q96RN1 970 aa14.53□□□□□ -0.08
CHD3-203ENST00000380358 CFAP100Q494V2 611 aa14.53□□□□□ -0.08
CHD3-203ENST00000380358 NUTM1Q86Y26 1132 aa14.53□□□□□ -0.08
CHD3-203ENST00000380358 ISM2Q6H9L7 571 aa14.53□□□□□ -0.08
CHD3-203ENST00000380358 SPATA32Q96LK8 384 aa14.52□□□□□ -0.08
CHD3-203ENST00000380358 EXOSC9Q06265 439 aaKnown RBP14.52□□□□□ -0.08
CHD3-203ENST00000380358 PPP1R12BO60237 982 aaPredicted RBP14.52□□□□□ -0.09
CHD3-203ENST00000380358 CETN2P41208 172 aa14.52□□□□□ -0.09
CHD3-203ENST00000380358 TWISTNBQ3B726 338 aaPredicted RBP14.52□□□□□ -0.09
CHD3-203ENST00000380358 MPRIPQ6WCQ1 1025 aa14.52□□□□□ -0.09
CHD3-203ENST00000380358 TCERG1LQ5VWI1 586 aa14.52□□□□□ -0.09
CHD3-203ENST00000380358 ZNF397Q8NF99 534 aaPredicted RBP14.52□□□□□ -0.09
CHD3-203ENST00000380358 C6orf229H3BNL8 230 aa14.51□□□□□ -0.09
CHD3-203ENST00000380358 CCDC66A2RUB6 948 aa14.51□□□□□ -0.09
CHD3-203ENST00000380358 RAB11FIP4Q86YS3 637 aa14.51□□□□□ -0.09
CHD3-203ENST00000380358 SH3BP5O60239 455 aa14.51□□□□□ -0.09
CHD3-203ENST00000380358 BICD1Q96G01 975 aa14.51□□□□□ -0.09
CHD3-203ENST00000380358 LETM1O95202 739 aaPredicted RBP14.51□□□□□ -0.09
CHD3-203ENST00000380358 GNAI3P08754 354 aa14.51□□□□□ -0.09
CHD3-203ENST00000380358 TDRD12Q587J7 1177 aaKnown RBP14.51□□□□□ -0.09
CHD3-203ENST00000380358 C16orf71Q8IYS4 520 aaPredicted RBP14.51□□□□□ -0.09
CHD3-203ENST00000380358 HIP1O00291 1037 aa14.51□□□□□ -0.09
CHD3-203ENST00000380358 ATP2C2O75185 946 aa14.51□□□□□ -0.09
CHD3-203ENST00000380358 RRS1Q15050 365 aaKnown RBP14.51□□□□□ -0.09
CHD3-203ENST00000380358 CKAP2LQ8IYA6 745 aa14.51□□□□□ -0.09
CHD3-203ENST00000380358 DNAI2Q9GZS0 605 aa14.51□□□□□ -0.09
CHD3-203ENST00000380358 AKNAD1Q5T1N1 836 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 FAM212AQ96EL1 285 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 EIF3JO75822 258 aaKnown RBP14.5□□□□□ -0.09
CHD3-203ENST00000380358 CCDC192P0DO97 292 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 PROCA1Q8NCQ7 364 aaPredicted RBP14.5□□□□□ -0.09
CHD3-203ENST00000380358 RPGRQ92834 1020 aaKnown RBP14.5□□□□□ -0.09
CHD3-203ENST00000380358 STAC3Q96MF2 364 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 ARHGAP29Q52LW3 1261 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 TMCO3Q6UWJ1 677 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 PAIP2Q9BPZ3 127 aaKnown RBP14.5□□□□□ -0.09
CHD3-203ENST00000380358 UACAQ9BZF9 1416 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 PRC1O43663 620 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 JPH4Q96JJ6 628 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 PRDM10Q9NQV6 1147 aa14.5□□□□□ -0.09
CHD3-203ENST00000380358 BIN2Q9UBW5 565 aaPredicted RBP14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms