RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 SART3Q15020 963 aaKnown RBP17.93■□□□□ 0.46
NPHP4-201ENST00000378156 CTDP1Q9Y5B0 961 aaPredicted RBP17.93■□□□□ 0.46
NPHP4-201ENST00000378156 ARHGEF12Q9NZN5 1544 aa17.93■□□□□ 0.46
NPHP4-201ENST00000378156 TNNQ9UQP3 1299 aa17.93■□□□□ 0.46
NPHP4-201ENST00000378156 TTC39AQ5SRH9 613 aa17.93■□□□□ 0.46
NPHP4-201ENST00000378156 CCDC47Q96A33 483 aaKnown RBP17.93■□□□□ 0.46
NPHP4-201ENST00000378156 FIBPO43427 364 aa17.93■□□□□ 0.46
NPHP4-201ENST00000378156 PDCP20941 246 aa17.93■□□□□ 0.46
NPHP4-201ENST00000378156 USHBP1Q8N6Y0 703 aa17.93■□□□□ 0.46
NPHP4-201ENST00000378156 ARGLU1Q9NWB6 273 aaPredicted RBP17.92■□□□□ 0.46
NPHP4-201ENST00000378156 MAGI3Q5TCQ9 1506 aa17.92■□□□□ 0.46
NPHP4-201ENST00000378156 SASS6Q6UVJ0 657 aa17.92■□□□□ 0.46
NPHP4-201ENST00000378156 C8orf34Q49A92 452 aa17.92■□□□□ 0.46
NPHP4-201ENST00000378156 AACSQ86V21 672 aa17.92■□□□□ 0.46
NPHP4-201ENST00000378156 SPINK5Q9NQ38 1064 aaPredicted RBP17.91■□□□□ 0.46
NPHP4-201ENST00000378156 CEP126Q9P2H0 1117 aa17.91■□□□□ 0.46
NPHP4-201ENST00000378156 A2MP01023 1474 aa17.91■□□□□ 0.46
NPHP4-201ENST00000378156 ANO8Q9HCE9 1232 aaPredicted RBP17.91■□□□□ 0.46
NPHP4-201ENST00000378156 TBC1D32Q96NH3 1257 aa17.91■□□□□ 0.46
NPHP4-201ENST00000378156 MPHOSPH8Q99549 860 aa17.91■□□□□ 0.46
NPHP4-201ENST00000378156 GNL3LQ9NVN8 582 aaKnown RBP17.91■□□□□ 0.46
NPHP4-201ENST00000378156 R3HCC1Q9Y3T6 440 aaKnown RBP17.91■□□□□ 0.46
NPHP4-201ENST00000378156 UHRF1BP1Q6BDS2 1440 aa17.91■□□□□ 0.46
NPHP4-201ENST00000378156 F6X3S4 739 aa17.91■□□□□ 0.46
NPHP4-201ENST00000378156 CCDC39Q9UFE4 941 aa17.91■□□□□ 0.46
NPHP4-201ENST00000378156 SHANK2Q9UPX8 1470 aa17.91■□□□□ 0.46
NPHP4-201ENST00000378156 TNRQ92752 1358 aa17.9■□□□□ 0.46
NPHP4-201ENST00000378156 FAM83GA6ND36 823 aa17.9■□□□□ 0.46
NPHP4-201ENST00000378156 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.9■□□□□ 0.46
NPHP4-201ENST00000378156 PTCD1O75127 700 aaKnown RBP17.9■□□□□ 0.46
NPHP4-201ENST00000378156 XBP1P17861 261 aa17.9■□□□□ 0.46
NPHP4-201ENST00000378156 ACEP12821 1306 aa17.89■□□□□ 0.46
NPHP4-201ENST00000378156 IPO7O95373 1038 aaKnown RBP17.89■□□□□ 0.46
NPHP4-201ENST00000378156 PIP4K2BP78356 416 aa17.89■□□□□ 0.46
NPHP4-201ENST00000378156 CYP46A1Q9Y6A2 500 aa17.89■□□□□ 0.46
NPHP4-201ENST00000378156 NOM1Q5C9Z4 860 aaKnown RBP17.89■□□□□ 0.45
NPHP4-201ENST00000378156 CCDC173Q0VFZ6 552 aa17.89■□□□□ 0.45
NPHP4-201ENST00000378156 ANKRD20A12PQ8NF67 263 aa17.89■□□□□ 0.45
NPHP4-201ENST00000378156 RLBP1P12271 317 aa17.89■□□□□ 0.45
NPHP4-201ENST00000378156 HOMER1Q86YM7 354 aa17.89■□□□□ 0.45
NPHP4-201ENST00000378156 TCEAL9Q9UHQ7 104 aa17.89■□□□□ 0.45
NPHP4-201ENST00000378156 STARD3NLO95772 234 aa17.88■□□□□ 0.45
NPHP4-201ENST00000378156 TTC21BQ7Z4L5 1316 aa17.88■□□□□ 0.45
NPHP4-201ENST00000378156 SAMD9Q5K651 1589 aa17.88■□□□□ 0.45
NPHP4-201ENST00000378156 TSPY26PQ9H489 355 aa17.88■□□□□ 0.45
NPHP4-201ENST00000378156 MBIPQ9NS73 344 aa17.88■□□□□ 0.45
NPHP4-201ENST00000378156 NCBP3Q53F19 620 aaKnown RBP17.88■□□□□ 0.45
NPHP4-201ENST00000378156 NUTM1Q86Y26 1132 aa17.88■□□□□ 0.45
NPHP4-201ENST00000378156 KLHL34Q8N239 644 aa17.88■□□□□ 0.45
NPHP4-201ENST00000378156 WDR7Q9Y4E6 1490 aa17.88■□□□□ 0.45
NPHP4-201ENST00000378156 ZNF518AQ6AHZ1 1483 aa17.87■□□□□ 0.45
NPHP4-201ENST00000378156 SDF4Q9BRK5 362 aa17.87■□□□□ 0.45
NPHP4-201ENST00000378156 ACBD3Q9H3P7 528 aa17.87■□□□□ 0.45
NPHP4-201ENST00000378156 BRMS1Q9HCU9 246 aa17.87■□□□□ 0.45
NPHP4-201ENST00000378156 COL17A1Q9UMD9 1497 aaPredicted RBP17.87■□□□□ 0.45
NPHP4-201ENST00000378156 POLR3AO14802 1390 aaPredicted RBP17.87■□□□□ 0.45
NPHP4-201ENST00000378156 LARP1Q6PKG0 1096 aaKnown RBP17.87■□□□□ 0.45
NPHP4-201ENST00000378156 MPRIPQ6WCQ1 1025 aa17.87■□□□□ 0.45
NPHP4-201ENST00000378156 ANKRD36BQ8N2N9 1353 aa17.87■□□□□ 0.45
NPHP4-201ENST00000378156 RRP12Q5JTH9 1297 aaKnown RBP17.87■□□□□ 0.45
NPHP4-201ENST00000378156 CWC27Q6UX04 472 aaKnown RBP17.86■□□□□ 0.45
NPHP4-201ENST00000378156 KRT28Q7Z3Y7 464 aa17.86■□□□□ 0.45
NPHP4-201ENST00000378156 UPF3BQ9BZI7 483 aaKnown RBP17.86■□□□□ 0.45
NPHP4-201ENST00000378156 MTMR7Q9Y216 660 aa17.86■□□□□ 0.45
NPHP4-201ENST00000378156 IL16Q14005 1332 aa17.86■□□□□ 0.45
NPHP4-201ENST00000378156 ADGRL2O95490 1459 aa17.86■□□□□ 0.45
NPHP4-201ENST00000378156 FKBP4Q02790 459 aaKnown RBP eCLIP17.86■□□□□ 0.45
NPHP4-201ENST00000378156 MPNDQ8N594 471 aa17.86■□□□□ 0.45
NPHP4-201ENST00000378156 KIF1BPQ96EK5 621 aa17.86■□□□□ 0.45
NPHP4-201ENST00000378156 TBC1D9Q6ZT07 1266 aa17.85■□□□□ 0.45
NPHP4-201ENST00000378156 BMP2KLQ5H9B9 411 aa17.85■□□□□ 0.45
NPHP4-201ENST00000378156 WDR33Q9C0J8 1336 aaKnown RBP17.85■□□□□ 0.45
NPHP4-201ENST00000378156 PIK3C2GO75747 1445 aa17.85■□□□□ 0.45
NPHP4-201ENST00000378156 SLC3A2P08195 630 aaKnown RBP17.85■□□□□ 0.45
NPHP4-201ENST00000378156 MX1P20591 662 aa17.84■□□□□ 0.45
NPHP4-201ENST00000378156 HMGN5P82970 282 aaKnown RBP17.84■□□□□ 0.45
NPHP4-201ENST00000378156 SPATA31E1Q6ZUB1 1445 aa17.84■□□□□ 0.45
NPHP4-201ENST00000378156 HDAC1Q13547 482 aaPredicted RBP17.84■□□□□ 0.45
NPHP4-201ENST00000378156 ANKRD1Q15327 319 aa17.84■□□□□ 0.45
NPHP4-201ENST00000378156 ABCA5Q8WWZ7 1642 aa17.84■□□□□ 0.45
NPHP4-201ENST00000378156 TNPO1Q92973 898 aaKnown RBP17.84■□□□□ 0.45
NPHP4-201ENST00000378156 NACAP1Q9BZK3 213 aa17.84■□□□□ 0.45
NPHP4-201ENST00000378156 UHRF1BP1LA0JNW5 1464 aa17.84■□□□□ 0.45
NPHP4-201ENST00000378156 SAMD1Q6SPF0 538 aaPredicted RBP17.84■□□□□ 0.45
NPHP4-201ENST00000378156 TMOD3Q9NYL9 352 aa17.84■□□□□ 0.45
NPHP4-201ENST00000378156 CCDC66A2RUB6 948 aa17.83■□□□□ 0.45
NPHP4-201ENST00000378156 SSFA2P28290 1259 aa17.83■□□□□ 0.45
NPHP4-201ENST00000378156 MNS1Q8NEH6 495 aa17.83■□□□□ 0.45
NPHP4-201ENST00000378156 RNF123Q5XPI4 1314 aa17.83■□□□□ 0.45
NPHP4-201ENST00000378156 ZSCAN25Q6NSZ9 544 aa17.83■□□□□ 0.44
NPHP4-201ENST00000378156 KIF21AQ7Z4S6 1674 aa17.83■□□□□ 0.44
NPHP4-201ENST00000378156 STK3Q13188 491 aa17.83■□□□□ 0.44
NPHP4-201ENST00000378156 PCMTD1Q96MG8 357 aaPredicted RBP17.83■□□□□ 0.44
NPHP4-201ENST00000378156 CCDC85AQ96PX6 553 aaPredicted RBP17.83■□□□□ 0.44
NPHP4-201ENST00000378156 ESPNB1AK53 854 aa17.82■□□□□ 0.44
NPHP4-201ENST00000378156 DBF4Q9UBU7 674 aaPredicted RBP17.82■□□□□ 0.44
NPHP4-201ENST00000378156 KDM4AO75164 1064 aa17.82■□□□□ 0.44
NPHP4-201ENST00000378156 ATP2B1P20020 1258 aa17.82■□□□□ 0.44
NPHP4-201ENST00000378156 BLOC1S2Q6QNY1 142 aa17.82■□□□□ 0.44
NPHP4-201ENST00000378156 CADPS2Q86UW7 1296 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms