RNA–Protein interactions for RNA: ENST00000368841.6

SNX27-202, Transcript of sorting nexin family member 27, humanhuman

TSL 1 (best)

Gene SNX27, Length 7,070 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-202ENST00000368841 PAXIP1Q6ZW49 1069 aaPredicted RBP21.39■■□□□ 1.02
SNX27-202ENST00000368841 SCLT1Q96NL6 688 aa21.39■■□□□ 1.02
SNX27-202ENST00000368841 FGD5Q6ZNL6 1462 aa21.39■■□□□ 1.01
SNX27-202ENST00000368841 FILIP1Q7Z7B0 1213 aa21.39■■□□□ 1.01
SNX27-202ENST00000368841 CHD1LQ86WJ1 897 aa21.39■■□□□ 1.01
SNX27-202ENST00000368841 KIAA1328Q86T90 577 aa21.39■■□□□ 1.01
SNX27-202ENST00000368841 NOL7Q9UMY1 257 aaKnown RBP21.39■■□□□ 1.01
SNX27-202ENST00000368841 CCT4P50991 539 aaKnown RBP21.38■■□□□ 1.01
SNX27-202ENST00000368841 CEP57L1Q8IYX8 460 aa21.38■■□□□ 1.01
SNX27-202ENST00000368841 MBD3O95983 291 aa21.38■■□□□ 1.01
SNX27-202ENST00000368841 MCM10Q7L590 875 aa21.38■■□□□ 1.01
SNX27-202ENST00000368841 TNNT1P13805 278 aa21.38■■□□□ 1.01
SNX27-202ENST00000368841 TTC16Q8NEE8 873 aa21.38■■□□□ 1.01
SNX27-202ENST00000368841 UQCRHLA0A096LP55 91 aa21.37■■□□□ 1.01
SNX27-202ENST00000368841 CCP110O43303 1012 aa21.37■■□□□ 1.01
SNX27-202ENST00000368841 UQCRHP07919 91 aa21.37■■□□□ 1.01
SNX27-202ENST00000368841 BLOC1S2Q6QNY1 142 aa21.37■■□□□ 1.01
SNX27-202ENST00000368841 EXOC6BQ9Y2D4 811 aa21.37■■□□□ 1.01
SNX27-202ENST00000368841 KLHL10Q6JEL2 608 aa21.37■■□□□ 1.01
SNX27-202ENST00000368841 PPFIA3O75145 1194 aa21.36■■□□□ 1.01
SNX27-202ENST00000368841 JMYQ8N9B5 988 aa21.36■■□□□ 1.01
SNX27-202ENST00000368841 RRBP1Q9P2E9 1410 aaKnown RBP21.36■■□□□ 1.01
SNX27-202ENST00000368841 BRD4O60885 1362 aaPredicted RBP21.36■■□□□ 1.01
SNX27-202ENST00000368841 AEBP1Q8IUX7 1158 aa21.36■■□□□ 1.01
SNX27-202ENST00000368841 DACH1Q9UI36 760 aa21.36■■□□□ 1.01
SNX27-202ENST00000368841 FERMT3Q86UX7 667 aa21.36■■□□□ 1.01
SNX27-202ENST00000368841 CUX1P39880 1505 aa21.36■■□□□ 1.01
SNX27-202ENST00000368841 PRDM11Q9NQV5 511 aa21.36■■□□□ 1.01
SNX27-202ENST00000368841 FYCO1Q9BQS8 1478 aa21.36■■□□□ 1.01
SNX27-202ENST00000368841 EIF5P55010 431 aaKnown RBP21.35■■□□□ 1.01
SNX27-202ENST00000368841 KRT85P78386 507 aa21.35■■□□□ 1.01
SNX27-202ENST00000368841 METTL24Q5JXM2 366 aa21.35■■□□□ 1.01
SNX27-202ENST00000368841 CCDC83Q8IWF9 413 aa21.35■■□□□ 1.01
SNX27-202ENST00000368841 AIDAQ96BJ3 306 aa21.35■■□□□ 1.01
SNX27-202ENST00000368841 ZRSR2Q15696 482 aaKnown RBP21.35■■□□□ 1.01
SNX27-202ENST00000368841 WDR78Q5VTH9 848 aa21.35■■□□□ 1.01
SNX27-202ENST00000368841 CCDC113Q9H0I3 377 aa21.35■■□□□ 1.01
SNX27-202ENST00000368841 CCDC102AQ96A19 550 aa21.35■■□□□ 1.01
SNX27-202ENST00000368841 ANKRD1Q15327 319 aa21.34■■□□□ 1.01
SNX27-202ENST00000368841 ANKIB1Q9P2G1 1089 aa21.34■■□□□ 1.01
SNX27-202ENST00000368841 PSMD1Q99460 953 aa21.34■■□□□ 1.01
SNX27-202ENST00000368841 MYD88Q99836 296 aa21.34■■□□□ 1.01
SNX27-202ENST00000368841 POLR3DP05423 398 aaPredicted RBP21.34■■□□□ 1.01
SNX27-202ENST00000368841 IGHMBP2P38935 993 aaKnown RBP21.34■■□□□ 1.01
SNX27-202ENST00000368841 CCDC144CPQ8IYA2 1237 aa21.34■■□□□ 1.01
SNX27-202ENST00000368841 GBP2P32456 591 aaPredicted RBP21.33■■□□□ 1.01
SNX27-202ENST00000368841 ADAMTS2O95450 1211 aa21.33■■□□□ 1.01
SNX27-202ENST00000368841 TTLL12Q14166 644 aaPredicted RBP21.33■■□□□ 1.01
SNX27-202ENST00000368841 PIP4K2AP48426 406 aaPredicted RBP21.33■■□□□ 1.01
SNX27-202ENST00000368841 ZSCAN25Q6NSZ9 544 aa21.33■■□□□ 1
SNX27-202ENST00000368841 WDR33Q9C0J8 1336 aaKnown RBP21.33■■□□□ 1
SNX27-202ENST00000368841 RTEL1-TNFRSF6BF6WH68 1400 aa21.32■■□□□ 1
SNX27-202ENST00000368841 KIAA0754O94854 1291 aa21.32■■□□□ 1
SNX27-202ENST00000368841 MCM2P49736 904 aa21.32■■□□□ 1
SNX27-202ENST00000368841 BOLA2Q9H3K6 86 aa21.32■■□□□ 1
SNX27-202ENST00000368841 SYCE3A1L190 88 aa21.32■■□□□ 1
SNX27-202ENST00000368841 CCDC112Q8NEF3 446 aa21.32■■□□□ 1
SNX27-202ENST00000368841 GRPEL1Q9HAV7 217 aa21.32■■□□□ 1
SNX27-202ENST00000368841 CRACR2BQ8N4Y2 399 aaPredicted RBP21.31■■□□□ 1
SNX27-202ENST00000368841 UPF3BQ9BZI7 483 aaKnown RBP21.31■■□□□ 1
SNX27-202ENST00000368841 GOPCQ9HD26 462 aa21.31■■□□□ 1
SNX27-202ENST00000368841 ECM2O94769 699 aaPredicted RBP21.31■■□□□ 1
SNX27-202ENST00000368841 NUP62CLQ9H1M0 184 aa21.31■■□□□ 1
SNX27-202ENST00000368841 NCOA2Q15596 1464 aa21.31■■□□□ 1
SNX27-202ENST00000368841 MVPQ14764 893 aaKnown RBP21.31■■□□□ 1
SNX27-202ENST00000368841 RAB11FIP4Q86YS3 637 aa21.3■■□□□ 1
SNX27-202ENST00000368841 CEP126Q9P2H0 1117 aa21.3■■□□□ 1
SNX27-202ENST00000368841 PRPF40BQ6NWY9 871 aaKnown RBP21.3■■□□□ 1
SNX27-202ENST00000368841 TMEM57Q8N5G2 664 aa21.3■■□□□ 1
SNX27-202ENST00000368841 ANKRD18AQ8IVF6 992 aa21.3■■□□□ 1
SNX27-202ENST00000368841 SMARCA4P51532 1647 aa21.3■■□□□ 1
SNX27-202ENST00000368841 ATF7IPQ6VMQ6 1270 aa21.3■■□□□ 1
SNX27-202ENST00000368841 CFAP100Q494V2 611 aa21.29■■□□□ 1
SNX27-202ENST00000368841 CCDC184Q52MB2 194 aa21.29■■□□□ 1
SNX27-202ENST00000368841 BMP2KQ9NSY1 1161 aaPredicted RBP21.29■■□□□ 1
SNX27-202ENST00000368841 IMMTQ16891 758 aaKnown RBP21.29■■□□□ 1
SNX27-202ENST00000368841 CCDC96Q2M329 555 aa21.28■■□□□ 1
SNX27-202ENST00000368841 MPRIPQ6WCQ1 1025 aa21.28■■□□□ 1
SNX27-202ENST00000368841 CBFA2T2O43439 604 aa21.28■■□□□ 1
SNX27-202ENST00000368841 SEC63Q9UGP8 760 aaKnown RBP21.28■■□□□ 1
SNX27-202ENST00000368841 SPDYE4A6NLX3 237 aa21.28■■□□□ 1
SNX27-202ENST00000368841 MKNK2Q9HBH9 465 aa21.28■■□□□ 1
SNX27-202ENST00000368841 LUC7LQ9NQ29 371 aaKnown RBP21.27■■□□□ 1
SNX27-202ENST00000368841 ATAD2BQ9ULI0 1458 aa21.27■■□□□ 1
SNX27-202ENST00000368841 EPB41L2O43491 1005 aaKnown RBP21.27■■□□□ 1
SNX27-202ENST00000368841 CCDC8Q9H0W5 538 aaPredicted RBP21.27■■□□□ 1
SNX27-202ENST00000368841 PRDM10Q9NQV6 1147 aa21.27■■□□□ 1
SNX27-202ENST00000368841 CCDC178Q5BJE1 867 aa21.27■■□□□ 1
SNX27-202ENST00000368841 BCCIPQ9P287 314 aaKnown RBP eCLIP21.27■■□□□ 1
SNX27-202ENST00000368841 JARID2Q92833 1246 aaPredicted RBP21.27■■□□□ 1
SNX27-202ENST00000368841 ERBINQ96RT1 1412 aa21.27■□□□□ 0.99
SNX27-202ENST00000368841 CTNNBL1Q8WYA6 563 aaPredicted RBP21.27■□□□□ 0.99
SNX27-202ENST00000368841 CDKL5O76039 1030 aa21.26■□□□□ 0.99
SNX27-202ENST00000368841 RANBP6O60518 1105 aaKnown RBP21.26■□□□□ 0.99
SNX27-202ENST00000368841 RAPGEF3O95398 923 aa21.26■□□□□ 0.99
SNX27-202ENST00000368841 ISM2Q6H9L7 571 aa21.26■□□□□ 0.99
SNX27-202ENST00000368841 CPLX3Q8WVH0 158 aa21.26■□□□□ 0.99
SNX27-202ENST00000368841 WAPLQ7Z5K2 1190 aa21.26■□□□□ 0.99
SNX27-202ENST00000368841 GNAT3A8MTJ3 354 aa21.25■□□□□ 0.99
SNX27-202ENST00000368841 ZPR1O75312 459 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms