RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 SCAND2PQ9GZW5 306 aaPredicted RBP17.43■□□□□ 0.38
CHD4-201ENST00000357008 EFCAB5A4FU69 1503 aa17.43■□□□□ 0.38
CHD4-201ENST00000357008 ZRSR2Q15696 482 aaKnown RBP17.43■□□□□ 0.38
CHD4-201ENST00000357008 ERICH4A6NGS2 130 aa17.43■□□□□ 0.38
CHD4-201ENST00000357008 TATP17735 454 aaPredicted RBP17.43■□□□□ 0.38
CHD4-201ENST00000357008 KIF18AQ8NI77 898 aa17.43■□□□□ 0.38
CHD4-201ENST00000357008 RARSP54136 660 aaKnown RBP17.42■□□□□ 0.38
CHD4-201ENST00000357008 NUP133Q8WUM0 1156 aa17.42■□□□□ 0.38
CHD4-201ENST00000357008 WASF1Q92558 559 aa17.42■□□□□ 0.38
CHD4-201ENST00000357008 TBC1D2Q9BYX2 928 aa17.42■□□□□ 0.38
CHD4-201ENST00000357008 PLEKHH1Q9ULM0 1364 aa17.42■□□□□ 0.38
CHD4-201ENST00000357008 ZSCAN12O43309 604 aa17.42■□□□□ 0.38
CHD4-201ENST00000357008 ZNF530Q6P9A1 599 aaPredicted RBP17.42■□□□□ 0.38
CHD4-201ENST00000357008 LRRFIP2Q9Y608 721 aaKnown RBP17.42■□□□□ 0.38
CHD4-201ENST00000357008 CCDC57Q2TAC2 916 aa17.42■□□□□ 0.38
CHD4-201ENST00000357008 CYB5RLQ6IPT4 315 aa17.42■□□□□ 0.38
CHD4-201ENST00000357008 CENPHQ9H3R5 247 aa17.42■□□□□ 0.38
CHD4-201ENST00000357008 FAM193AP78312 1265 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 CAMK4Q16566 473 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 ANO10Q9NW15 660 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 ATAD2Q6PL18 1390 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.41■□□□□ 0.38
CHD4-201ENST00000357008 MX1P20591 662 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 ALDH1L2Q3SY69 923 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 PLCD4Q9BRC7 762 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 FAM177BA6PVY3 158 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 PDCL3Q9H2J4 239 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 C20orf194Q5TEA3 1177 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 TNPO1Q92973 898 aaKnown RBP17.41■□□□□ 0.38
CHD4-201ENST00000357008 SYNJ2O15056 1496 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 FKBP4Q02790 459 aaKnown RBP eCLIP17.41■□□□□ 0.38
CHD4-201ENST00000357008 SEPT7Q16181 437 aaKnown RBP17.41■□□□□ 0.38
CHD4-201ENST00000357008 CCDC148Q8NFR7 591 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 KIF1BPQ96EK5 621 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 SH2B1Q9NRF2 756 aaPredicted RBP17.41■□□□□ 0.38
CHD4-201ENST00000357008 EXOC6BQ9Y2D4 811 aa17.41■□□□□ 0.38
CHD4-201ENST00000357008 SOGA3Q5TF21 947 aa17.4■□□□□ 0.38
CHD4-201ENST00000357008 CCDC83Q8IWF9 413 aa17.4■□□□□ 0.38
CHD4-201ENST00000357008 STK11IPQ8N1F8 1099 aa17.4■□□□□ 0.38
CHD4-201ENST00000357008 GLRX3O76003 335 aaKnown RBP17.4■□□□□ 0.38
CHD4-201ENST00000357008 FERMT3Q86UX7 667 aa17.4■□□□□ 0.38
CHD4-201ENST00000357008 NKTRP30414 1462 aaKnown RBP17.4■□□□□ 0.38
CHD4-201ENST00000357008 POLA1P09884 1462 aaPredicted RBP17.4■□□□□ 0.38
CHD4-201ENST00000357008 DDX11Q96FC9 970 aa17.4■□□□□ 0.38
CHD4-201ENST00000357008 RAB11FIP3O75154 756 aa17.4■□□□□ 0.38
CHD4-201ENST00000357008 TXNDC2Q86VQ3 553 aa17.4■□□□□ 0.38
CHD4-201ENST00000357008 CEP126Q9P2H0 1117 aa17.4■□□□□ 0.38
CHD4-201ENST00000357008 MCM5P33992 734 aa17.39■□□□□ 0.37
CHD4-201ENST00000357008 XPCQ01831 940 aaPredicted RBP17.39■□□□□ 0.37
CHD4-201ENST00000357008 KIAA1328Q86T90 577 aa17.39■□□□□ 0.37
CHD4-201ENST00000357008 RBM42Q9BTD8 480 aaKnown RBP17.39■□□□□ 0.37
CHD4-201ENST00000357008 BMP2KQ9NSY1 1161 aaPredicted RBP17.39■□□□□ 0.37
CHD4-201ENST00000357008 SSFA2P28290 1259 aa17.39■□□□□ 0.37
CHD4-201ENST00000357008 ANKRD18AQ8IVF6 992 aa17.39■□□□□ 0.37
CHD4-201ENST00000357008 NUTM1Q86Y26 1132 aa17.39■□□□□ 0.37
CHD4-201ENST00000357008 UBAC1Q9BSL1 405 aa17.39■□□□□ 0.37
CHD4-201ENST00000357008 CRACR2AQ9BSW2 395 aa17.39■□□□□ 0.37
CHD4-201ENST00000357008 CEP131Q9UPN4 1083 aa17.39■□□□□ 0.37
CHD4-201ENST00000357008 EIF5P55010 431 aaKnown RBP17.39■□□□□ 0.37
CHD4-201ENST00000357008 CNKSR2Q8WXI2 1034 aa17.39■□□□□ 0.37
CHD4-201ENST00000357008 TIAM1Q13009 1591 aa17.38■□□□□ 0.37
CHD4-201ENST00000357008 ZHX3Q9H4I2 956 aa17.38■□□□□ 0.37
CHD4-201ENST00000357008 CBX1P83916 185 aa17.38■□□□□ 0.37
CHD4-201ENST00000357008 ESCO1Q5FWF5 840 aa17.38■□□□□ 0.37
CHD4-201ENST00000357008 SSH1Q8WYL5 1049 aa17.38■□□□□ 0.37
CHD4-201ENST00000357008 CGNQ9P2M7 1197 aaKnown RBP17.38■□□□□ 0.37
CHD4-201ENST00000357008 OSCARQ8IYS5 282 aa17.38■□□□□ 0.37
CHD4-201ENST00000357008 ABCC11Q96J66 1382 aa17.38■□□□□ 0.37
CHD4-201ENST00000357008 ENOX2Q16206 610 aaKnown RBP17.38■□□□□ 0.37
CHD4-201ENST00000357008 RPGRIP1LQ68CZ1 1315 aa17.38■□□□□ 0.37
CHD4-201ENST00000357008 NSD3Q9BZ95 1437 aa17.38■□□□□ 0.37
CHD4-201ENST00000357008 AQRO60306 1485 aaKnown RBP eCLIP17.38■□□□□ 0.374e-7■■■■□ 24.4
CHD4-201ENST00000357008 RTEL1-TNFRSF6BF6WH68 1400 aa17.37■□□□□ 0.37
CHD4-201ENST00000357008 IMMTQ16891 758 aaKnown RBP17.37■□□□□ 0.37
CHD4-201ENST00000357008 TAX1BP1Q86VP1 789 aa17.37■□□□□ 0.37
CHD4-201ENST00000357008 CABP4P57796 275 aa17.37■□□□□ 0.37
CHD4-201ENST00000357008 DAPK1P53355 1430 aa17.37■□□□□ 0.37
CHD4-201ENST00000357008 TAF4BQ92750 862 aa17.37■□□□□ 0.37
CHD4-201ENST00000357008 SLC52A1Q9NWF4 448 aa17.37■□□□□ 0.37
CHD4-201ENST00000357008 FAM69CQ0P6D2 419 aa17.37■□□□□ 0.37
CHD4-201ENST00000357008 NEMFO60524 1076 aa17.37■□□□□ 0.37
CHD4-201ENST00000357008 CTAGE5O15320 804 aa17.36■□□□□ 0.37
CHD4-201ENST00000357008 LRPPRCP42704 1394 aaKnown RBP17.36■□□□□ 0.37
CHD4-201ENST00000357008 MYL6BP14649 208 aa17.36■□□□□ 0.37
CHD4-201ENST00000357008 PRPF40BQ6NWY9 871 aaKnown RBP17.36■□□□□ 0.37
CHD4-201ENST00000357008 CLIP2Q9UDT6 1046 aa17.36■□□□□ 0.37
CHD4-201ENST00000357008 U3KPZ7 1027 aaPredicted RBP17.36■□□□□ 0.37
CHD4-201ENST00000357008 TDO2P48775 406 aa17.36■□□□□ 0.37
CHD4-201ENST00000357008 SKAP1Q86WV1 359 aa17.36■□□□□ 0.37
CHD4-201ENST00000357008 MAP9Q49MG5 647 aa17.35■□□□□ 0.37
CHD4-201ENST00000357008 SPG7Q9UQ90 795 aa17.35■□□□□ 0.37
CHD4-201ENST00000357008 ZNF397Q8NF99 534 aaPredicted RBP17.35■□□□□ 0.37
CHD4-201ENST00000357008 MPHOSPH8Q99549 860 aa17.35■□□□□ 0.37
CHD4-201ENST00000357008 USP25Q9UHP3 1055 aa17.35■□□□□ 0.37
CHD4-201ENST00000357008 KIF5CO60282 957 aa17.35■□□□□ 0.37
CHD4-201ENST00000357008 URI1O94763 535 aaPredicted RBP17.35■□□□□ 0.37
CHD4-201ENST00000357008 TROQ12816 1431 aaPredicted RBP17.35■□□□□ 0.37
CHD4-201ENST00000357008 PRXQ9BXM0 1461 aa17.35■□□□□ 0.37
CHD4-201ENST00000357008 TNNT1P13805 278 aa17.34■□□□□ 0.37
CHD4-201ENST00000357008 LIMCH1Q9UPQ0 1083 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 158.7 ms