RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 NCKAP5LQ9HCH0 1330 aa17.9■□□□□ 0.46
COL17A1-201ENST00000353479 SPINK5Q9NQ38 1064 aaPredicted RBP17.9■□□□□ 0.46
COL17A1-201ENST00000353479 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.9■□□□□ 0.46
COL17A1-201ENST00000353479 TTC21AQ8NDW8 1320 aa17.9■□□□□ 0.46
COL17A1-201ENST00000353479 SLC3A2P08195 630 aaKnown RBP17.89■□□□□ 0.46
COL17A1-201ENST00000353479 NKTRP30414 1462 aaKnown RBP17.89■□□□□ 0.46
COL17A1-201ENST00000353479 IFNL2Q8IZJ0 200 aa17.89■□□□□ 0.45
COL17A1-201ENST00000353479 CWC22Q9HCG8 908 aaKnown RBP17.89■□□□□ 0.45
COL17A1-201ENST00000353479 IGHMBP2P38935 993 aaKnown RBP17.89■□□□□ 0.45
COL17A1-201ENST00000353479 FMNL2Q96PY5 1086 aa17.88■□□□□ 0.45
COL17A1-201ENST00000353479 ZPR1O75312 459 aa17.88■□□□□ 0.45
COL17A1-201ENST00000353479 ZNF652Q9Y2D9 606 aa17.88■□□□□ 0.45
COL17A1-201ENST00000353479 NPHP3Q7Z494 1330 aa17.88■□□□□ 0.45
COL17A1-201ENST00000353479 NUTM1Q86Y26 1132 aa17.88■□□□□ 0.45
COL17A1-201ENST00000353479 C20orf194Q5TEA3 1177 aa17.87■□□□□ 0.45
COL17A1-201ENST00000353479 ZRANB1Q9UGI0 708 aa17.87■□□□□ 0.45
COL17A1-201ENST00000353479 CCDC47Q96A33 483 aaKnown RBP17.87■□□□□ 0.45
COL17A1-201ENST00000353479 BRMS1Q9HCU9 246 aa17.87■□□□□ 0.45
COL17A1-201ENST00000353479 DNMT1P26358 1616 aaKnown RBP17.86■□□□□ 0.45
COL17A1-201ENST00000353479 XBP1P17861 261 aa17.86■□□□□ 0.45
COL17A1-201ENST00000353479 RABEP1Q15276 862 aa17.86■□□□□ 0.45
COL17A1-201ENST00000353479 DBF4Q9UBU7 674 aaPredicted RBP17.86■□□□□ 0.45
COL17A1-201ENST00000353479 NACAP1Q9BZK3 213 aa17.86■□□□□ 0.45
COL17A1-201ENST00000353479 UBAP1LF5GYI3 381 aa17.85■□□□□ 0.45
COL17A1-201ENST00000353479 DNAAF4Q8WXU2 420 aa17.85■□□□□ 0.45
COL17A1-201ENST00000353479 TPM2P07951 284 aa17.85■□□□□ 0.45
COL17A1-201ENST00000353479 METTL24Q5JXM2 366 aa17.85■□□□□ 0.45
COL17A1-201ENST00000353479 ATP7AQ04656 1500 aa17.85■□□□□ 0.45
COL17A1-201ENST00000353479 ZSCAN25Q6NSZ9 544 aa17.85■□□□□ 0.45
COL17A1-201ENST00000353479 HOOK1Q9UJC3 728 aaKnown RBP17.85■□□□□ 0.45
COL17A1-201ENST00000353479 MBIPQ9NS73 344 aa17.85■□□□□ 0.45
COL17A1-201ENST00000353479 HYPKQ9NX55 129 aa17.85■□□□□ 0.45
COL17A1-201ENST00000353479 CWC27Q6UX04 472 aaKnown RBP17.84■□□□□ 0.45
COL17A1-201ENST00000353479 CCDC73Q6ZRK6 1079 aa17.84■□□□□ 0.45
COL17A1-201ENST00000353479 KCNA6P17658 529 aa17.84■□□□□ 0.45
COL17A1-201ENST00000353479 RBM5P52756 815 aaKnown RBP eCLIP17.84■□□□□ 0.45
COL17A1-201ENST00000353479 ATP10AO60312 1499 aa17.84■□□□□ 0.45
COL17A1-201ENST00000353479 ASXL1Q8IXJ9 1541 aa17.84■□□□□ 0.45
COL17A1-201ENST00000353479 TOM1O60784 492 aa17.83■□□□□ 0.45
COL17A1-201ENST00000353479 RAI14Q9P0K7 980 aa17.83■□□□□ 0.45
COL17A1-201ENST00000353479 TPM3P06753 285 aa17.83■□□□□ 0.45
COL17A1-201ENST00000353479 PDE4CQ08493 712 aa17.83■□□□□ 0.45
COL17A1-201ENST00000353479 TSR1Q2NL82 804 aaKnown RBP17.83■□□□□ 0.45
COL17A1-201ENST00000353479 CCDC43Q96MW1 224 aaKnown RBP17.83■□□□□ 0.45
COL17A1-201ENST00000353479 CYP46A1Q9Y6A2 500 aa17.83■□□□□ 0.45
COL17A1-201ENST00000353479 SMARCA5O60264 1052 aaPredicted RBP17.83■□□□□ 0.44
COL17A1-201ENST00000353479 FLIIQ13045 1269 aa17.83■□□□□ 0.44
COL17A1-201ENST00000353479 GSE1Q14687 1217 aa17.83■□□□□ 0.44
COL17A1-201ENST00000353479 CABLES1Q8TDN4 633 aa17.83■□□□□ 0.44
COL17A1-201ENST00000353479 ZBTB3Q9H5J0 574 aa17.83■□□□□ 0.44
COL17A1-201ENST00000353479 ATP2B2Q01814 1243 aa17.83■□□□□ 0.44
COL17A1-201ENST00000353479 C19orf44Q9H6X5 657 aa17.82■□□□□ 0.44
COL17A1-201ENST00000353479 EIF2AK4Q9P2K8 1649 aaKnown RBP17.82■□□□□ 0.44
COL17A1-201ENST00000353479 MCM2P49736 904 aa17.82■□□□□ 0.44
COL17A1-201ENST00000353479 KIF1BPQ96EK5 621 aa17.82■□□□□ 0.44
COL17A1-201ENST00000353479 TRMT112Q9UI30 125 aaKnown RBP17.82■□□□□ 0.44
COL17A1-201ENST00000353479 DCAF8L1A6NGE4 600 aa17.82■□□□□ 0.44
COL17A1-201ENST00000353479 ATP2B1P20020 1258 aa17.82■□□□□ 0.44
COL17A1-201ENST00000353479 LRP2BPQ9P2M1 347 aa17.82■□□□□ 0.44
COL17A1-201ENST00000353479 IDH1O75874 414 aaKnown RBP17.81■□□□□ 0.44
COL17A1-201ENST00000353479 TARBP1Q13395 1621 aaKnown RBP17.81■□□□□ 0.44
COL17A1-201ENST00000353479 STK3Q13188 491 aa17.81■□□□□ 0.44
COL17A1-201ENST00000353479 LRRFIP2Q9Y608 721 aaKnown RBP17.81■□□□□ 0.44
COL17A1-201ENST00000353479 NOC3LQ8WTT2 800 aaKnown RBP17.81■□□□□ 0.44
COL17A1-201ENST00000353479 HMGB2P26583 209 aaKnown RBP17.81■□□□□ 0.44
COL17A1-201ENST00000353479 SAMD9Q5K651 1589 aa17.81■□□□□ 0.44
COL17A1-201ENST00000353479 GPTP24298 496 aa17.81■□□□□ 0.44
COL17A1-201ENST00000353479 TRIM27P14373 513 aa17.8■□□□□ 0.44
COL17A1-201ENST00000353479 TPM1P09493 284 aa17.8■□□□□ 0.44
COL17A1-201ENST00000353479 PZPP20742 1482 aa17.8■□□□□ 0.44
COL17A1-201ENST00000353479 PCMTD1Q96MG8 357 aaPredicted RBP17.8■□□□□ 0.44
COL17A1-201ENST00000353479 ABCC1P33527 1531 aa17.8■□□□□ 0.44
COL17A1-201ENST00000353479 A0A087WZG4 1122 aa17.8■□□□□ 0.44
COL17A1-201ENST00000353479 AEBP1Q8IUX7 1158 aa17.8■□□□□ 0.44
COL17A1-201ENST00000353479 TESK2Q96S53 571 aa17.8■□□□□ 0.44
COL17A1-201ENST00000353479 HSP90AB3PQ58FF7 597 aa17.79■□□□□ 0.44
COL17A1-201ENST00000353479 SASS6Q6UVJ0 657 aa17.79■□□□□ 0.44
COL17A1-201ENST00000353479 ABCF2Q9UG63 623 aa17.79■□□□□ 0.44
COL17A1-201ENST00000353479 MAP3K2Q9Y2U5 619 aa17.79■□□□□ 0.44
COL17A1-201ENST00000353479 RAB11FIP3O75154 756 aa17.79■□□□□ 0.44
COL17A1-201ENST00000353479 EIF4A2Q14240 407 aaKnown RBP17.79■□□□□ 0.44
COL17A1-201ENST00000353479 YTHDC2Q9H6S0 1430 aaKnown RBP17.79■□□□□ 0.44
COL17A1-201ENST00000353479 MX1P20591 662 aa17.79■□□□□ 0.44
COL17A1-201ENST00000353479 IFIT5Q13325 482 aaKnown RBP17.79■□□□□ 0.44
COL17A1-201ENST00000353479 MAST1Q9Y2H9 1570 aa17.79■□□□□ 0.44
COL17A1-201ENST00000353479 PTPRCP08575 1304 aa17.79■□□□□ 0.44
COL17A1-201ENST00000353479 TDO2P48775 406 aa17.78■□□□□ 0.44
COL17A1-201ENST00000353479 CEP89Q96ST8 783 aa17.78■□□□□ 0.44
COL17A1-201ENST00000353479 BACH2Q9BYV9 841 aa17.78■□□□□ 0.44
COL17A1-201ENST00000353479 AKAP2Q9Y2D5 859 aa17.78■□□□□ 0.44
COL17A1-201ENST00000353479 ZCRB1Q8TBF4 217 aaKnown RBP17.78■□□□□ 0.44
COL17A1-201ENST00000353479 POLKQ9UBT6 870 aa17.78■□□□□ 0.44
COL17A1-201ENST00000353479 ANKRD20A12PQ8NF67 263 aa17.78■□□□□ 0.44
COL17A1-201ENST00000353479 ANXA1P04083 346 aa17.77■□□□□ 0.44
COL17A1-201ENST00000353479 LRRC59Q96AG4 307 aaKnown RBP17.77■□□□□ 0.44
COL17A1-201ENST00000353479 PDCP20941 246 aa17.77■□□□□ 0.44
COL17A1-201ENST00000353479 TEX13AQ9BXU3 409 aaPredicted RBP17.77■□□□□ 0.44
COL17A1-201ENST00000353479 TBX22Q9Y458 520 aa17.77■□□□□ 0.44
COL17A1-201ENST00000353479 ATP5J2-PTCD1G3V325 749 aa17.77■□□□□ 0.43
COL17A1-201ENST00000353479 NPATQ14207 1427 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms