RNA–Protein interactions for RNA: ENST00000345392.2

VHL-202, Transcript of von Hippel-Lindau tumor suppressor, humanhuman

TSL 1 (best) BASIC

Gene VHL, Length 2,696 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VHL-202ENST00000345392 FAM83GA6ND36 823 aa21.9■■□□□ 1.1
VHL-202ENST00000345392 RRS1Q15050 365 aaKnown RBP21.9■■□□□ 1.1
VHL-202ENST00000345392 ANKRD26Q9UPS8 1709 aa21.9■■□□□ 1.1
VHL-202ENST00000345392 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.89■■□□□ 1.1
VHL-202ENST00000345392 GPT2Q8TD30 523 aa21.89■■□□□ 1.1
VHL-202ENST00000345392 XPCQ01831 940 aaPredicted RBP21.89■■□□□ 1.09
VHL-202ENST00000345392 DCTN1Q14203 1278 aa21.89■■□□□ 1.09
VHL-202ENST00000345392 FOXD4L5Q5VV16 416 aaPredicted RBP21.88■■□□□ 1.09
VHL-202ENST00000345392 FOXD4L4Q8WXT5 416 aaPredicted RBP21.88■■□□□ 1.09
VHL-202ENST00000345392 DCTPP1Q9H773 170 aa21.88■■□□□ 1.09
VHL-202ENST00000345392 IFT57Q9NWB7 429 aa21.88■■□□□ 1.09
VHL-202ENST00000345392 SMARCA5O60264 1052 aaPredicted RBP21.87■■□□□ 1.09
VHL-202ENST00000345392 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.87■■□□□ 1.09
VHL-202ENST00000345392 ESF1Q9H501 851 aaKnown RBP21.86■■□□□ 1.09
VHL-202ENST00000345392 ZDHHC9Q9Y397 364 aa21.86■■□□□ 1.09
VHL-202ENST00000345392 SDSP20132 328 aa21.86■■□□□ 1.09
VHL-202ENST00000345392 INTS3Q68E01 1043 aaKnown RBP21.86■■□□□ 1.09
VHL-202ENST00000345392 API5Q9BZZ5 524 aaKnown RBP21.86■■□□□ 1.09
VHL-202ENST00000345392 NOL7Q9UMY1 257 aaKnown RBP21.86■■□□□ 1.09
VHL-202ENST00000345392 KIF20BQ96Q89 1820 aa21.86■■□□□ 1.09
VHL-202ENST00000345392 ZNF853P0CG23 659 aa21.85■■□□□ 1.09
VHL-202ENST00000345392 FAM13BQ9NYF5 915 aa21.85■■□□□ 1.09
VHL-202ENST00000345392 CLTCQ00610 1675 aaKnown RBP21.85■■□□□ 1.09
VHL-202ENST00000345392 NSFL1CQ9UNZ2 370 aaKnown RBP21.85■■□□□ 1.09
VHL-202ENST00000345392 CEBPAP49715 358 aaPredicted RBP21.84■■□□□ 1.09
VHL-202ENST00000345392 TXNDC2Q86VQ3 553 aa21.84■■□□□ 1.09
VHL-202ENST00000345392 PDLIM2Q96JY6 352 aa21.84■■□□□ 1.09
VHL-202ENST00000345392 MAP2P11137 1827 aaKnown RBP21.83■■□□□ 1.09
VHL-202ENST00000345392 SYCE3A1L190 88 aa21.83■■□□□ 1.09
VHL-202ENST00000345392 ST18O60284 1047 aa21.83■■□□□ 1.09
VHL-202ENST00000345392 CWC22Q9HCG8 908 aaKnown RBP21.83■■□□□ 1.09
VHL-202ENST00000345392 TMEM63CQ9P1W3 806 aa21.83■■□□□ 1.09
VHL-202ENST00000345392 CFAP44Q96MT7 982 aa21.82■■□□□ 1.08
VHL-202ENST00000345392 HS1BP3Q53T59 392 aa21.82■■□□□ 1.08
VHL-202ENST00000345392 KNDC1Q76NI1 1749 aa21.81■■□□□ 1.08
VHL-202ENST00000345392 IL13P35225 146 aa21.81■■□□□ 1.08
VHL-202ENST00000345392 KRT24Q2M2I5 525 aa21.81■■□□□ 1.08
VHL-202ENST00000345392 RNF214Q8ND24 703 aa21.8■■□□□ 1.08
VHL-202ENST00000345392 NUTM2FA1L443 756 aa21.8■■□□□ 1.08
VHL-202ENST00000345392 ZNF500O60304 480 aaPredicted RBP21.8■■□□□ 1.08
VHL-202ENST00000345392 ANKRD44Q8N8A2 993 aa21.79■■□□□ 1.08
VHL-202ENST00000345392 CASC1Q6TDU7 716 aa21.79■■□□□ 1.08
VHL-202ENST00000345392 LRSAM1Q6UWE0 723 aa21.78■■□□□ 1.08
VHL-202ENST00000345392 AGLP35573 1532 aa21.78■■□□□ 1.08
VHL-202ENST00000345392 UQCRHLA0A096LP55 91 aa21.78■■□□□ 1.08
VHL-202ENST00000345392 UQCRHP07919 91 aa21.78■■□□□ 1.08
VHL-202ENST00000345392 CEP85Q6P2H3 762 aa21.78■■□□□ 1.08
VHL-202ENST00000345392 ZKSCAN5Q9Y2L8 839 aa21.78■■□□□ 1.08
VHL-202ENST00000345392 AEBP1Q8IUX7 1158 aa21.77■■□□□ 1.08
VHL-202ENST00000345392 ARID3AQ99856 593 aa21.77■■□□□ 1.08
VHL-202ENST00000345392 REREQ9P2R6 1566 aa21.77■■□□□ 1.08
VHL-202ENST00000345392 SOX12O15370 315 aa21.77■■□□□ 1.08
VHL-202ENST00000345392 TERF1P54274 439 aa21.77■■□□□ 1.08
VHL-202ENST00000345392 RIMS2Q9UQ26 1411 aa21.77■■□□□ 1.08
VHL-202ENST00000345392 CDC42BPGQ6DT37 1551 aa21.77■■□□□ 1.07
VHL-202ENST00000345392 WASLO00401 505 aaPredicted RBP21.76■■□□□ 1.07
VHL-202ENST00000345392 METP08581 1390 aa21.76■■□□□ 1.07
VHL-202ENST00000345392 A2ML1A8K2U0 1454 aa21.75■■□□□ 1.07
VHL-202ENST00000345392 ZBTB7CA1YPR0 619 aa21.75■■□□□ 1.07
VHL-202ENST00000345392 NUDT16Q96DE0 195 aaKnown RBP21.75■■□□□ 1.07
VHL-202ENST00000345392 ATP10DQ9P241 1426 aa21.75■■□□□ 1.07
VHL-202ENST00000345392 REC8O95072 547 aa21.74■■□□□ 1.07
VHL-202ENST00000345392 NEK4P51957 841 aa21.74■■□□□ 1.07
VHL-202ENST00000345392 MEIS3Q99687 375 aa21.74■■□□□ 1.07
VHL-202ENST00000345392 RPAP2Q8IXW5 612 aaPredicted RBP21.74■■□□□ 1.07
VHL-202ENST00000345392 COG3Q96JB2 828 aa21.74■■□□□ 1.07
VHL-202ENST00000345392 NOL8Q76FK4 1167 aaKnown RBP21.73■■□□□ 1.07
VHL-202ENST00000345392 CPS1P31327 1500 aa21.73■■□□□ 1.07
VHL-202ENST00000345392 ERC2O15083 957 aa21.73■■□□□ 1.07
VHL-202ENST00000345392 FOXD4L6Q3SYB3 417 aaPredicted RBP21.73■■□□□ 1.07
VHL-202ENST00000345392 FOXD4L3Q6VB84 417 aaPredicted RBP21.73■■□□□ 1.07
VHL-202ENST00000345392 ATP7BP35670 1465 aa21.73■■□□□ 1.07
VHL-202ENST00000345392 TMX3Q96JJ7 454 aa21.72■■□□□ 1.07
VHL-202ENST00000345392 LMOD3Q0VAK6 560 aa21.72■■□□□ 1.07
VHL-202ENST00000345392 TSHZ3Q63HK5 1081 aa21.72■■□□□ 1.07
VHL-202ENST00000345392 MSH6P52701 1360 aa21.71■■□□□ 1.07
VHL-202ENST00000345392 KIF24Q5T7B8 1368 aa21.71■■□□□ 1.07
VHL-202ENST00000345392 MCM10Q7L590 875 aa21.7■■□□□ 1.06
VHL-202ENST00000345392 RTL1A6NKG5 1358 aa21.7■■□□□ 1.06
VHL-202ENST00000345392 EDC4Q6P2E9 1401 aaKnown RBP21.7■■□□□ 1.06
VHL-202ENST00000345392 MPNDQ8N594 471 aa21.7■■□□□ 1.06
VHL-202ENST00000345392 CCDC39Q9UFE4 941 aa21.7■■□□□ 1.06
VHL-202ENST00000345392 DLG5Q8TDM6 1919 aa21.69■■□□□ 1.06
VHL-202ENST00000345392 CPSF1Q10570 1443 aaKnown RBP21.69■■□□□ 1.06
VHL-202ENST00000345392 SULT6B1Q6IMI4 303 aa21.69■■□□□ 1.06
VHL-202ENST00000345392 RGS12O14924 1447 aa21.68■■□□□ 1.06
VHL-202ENST00000345392 PTMAP06454 111 aaKnown RBP21.67■■□□□ 1.06
VHL-202ENST00000345392 CSPP1Q1MSJ5 1256 aa21.67■■□□□ 1.06
VHL-202ENST00000345392 GDPD2Q9HCC8 539 aa21.67■■□□□ 1.06
VHL-202ENST00000345392 PRR36Q9H6K5 1346 aa21.67■■□□□ 1.06
VHL-202ENST00000345392 MIS18AQ9NYP9 233 aa21.67■■□□□ 1.06
VHL-202ENST00000345392 MBD3O95983 291 aa21.66■■□□□ 1.06
VHL-202ENST00000345392 PDE1AP54750 535 aa21.66■■□□□ 1.06
VHL-202ENST00000345392 CCDC61Q9Y6R9 512 aa21.66■■□□□ 1.06
VHL-202ENST00000345392 CDK12Q9NYV4 1490 aaPredicted RBP21.66■■□□□ 1.06
VHL-202ENST00000345392 BRD1O95696 1058 aa21.66■■□□□ 1.06
VHL-202ENST00000345392 MCM5P33992 734 aa21.66■■□□□ 1.06
VHL-202ENST00000345392 PALD1Q9ULE6 856 aa21.66■■□□□ 1.06
VHL-202ENST00000345392 SLC4A10Q6U841 1118 aa21.65■■□□□ 1.06
VHL-202ENST00000345392 SETD1AO15047 1707 aaKnown RBP21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms