RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 RBM33Q96EV2 1170 aaKnown RBP2.82□□□□□ -1.96
LINC00643-201ENST00000334389 ZBTB22O15209 634 aa2.82□□□□□ -1.96
LINC00643-201ENST00000334389 MMP14P50281 582 aa2.81□□□□□ -1.96
LINC00643-201ENST00000334389 CD2APQ9Y5K6 639 aa2.81□□□□□ -1.96
LINC00643-201ENST00000334389 RGPD2P0DJD1 1756 aa2.81□□□□□ -1.96
LINC00643-201ENST00000334389 SLC27A3Q5K4L6 730 aa2.81□□□□□ -1.96
LINC00643-201ENST00000334389 FAM196AQ6ZSG2 479 aa2.81□□□□□ -1.96
LINC00643-201ENST00000334389 IRS2Q9Y4H2 1338 aa2.8□□□□□ -1.96
LINC00643-201ENST00000334389 CA12O43570 354 aa2.8□□□□□ -1.96
LINC00643-201ENST00000334389 HS3ST6Q96QI5 342 aa2.8□□□□□ -1.96
LINC00643-201ENST00000334389 ESF1Q9H501 851 aaKnown RBP2.8□□□□□ -1.96
LINC00643-201ENST00000334389 IBTKQ9P2D0 1353 aaPredicted RBP2.8□□□□□ -1.96
LINC00643-201ENST00000334389 CGNL1Q0VF96 1302 aa2.8□□□□□ -1.96
LINC00643-201ENST00000334389 MNX1P50219 401 aaPredicted RBP2.8□□□□□ -1.96
LINC00643-201ENST00000334389 PLA2G2EQ9NZK7 142 aa2.8□□□□□ -1.96
LINC00643-201ENST00000334389 FAM83GA6ND36 823 aa2.8□□□□□ -1.96
LINC00643-201ENST00000334389 UNCXA6NJT0 531 aa2.8□□□□□ -1.96
LINC00643-201ENST00000334389 PALLDQ8WX93 1383 aa2.79□□□□□ -1.96
LINC00643-201ENST00000334389 EMP3P54852 163 aa2.79□□□□□ -1.96
LINC00643-201ENST00000334389 FLAD1Q8NFF5 587 aa2.79□□□□□ -1.96
LINC00643-201ENST00000334389 CSRNP3Q8WYN3 585 aa2.79□□□□□ -1.96
LINC00643-201ENST00000334389 CPSF1Q10570 1443 aaKnown RBP2.79□□□□□ -1.96
LINC00643-201ENST00000334389 ARID4BQ4LE39 1312 aaPredicted RBP2.79□□□□□ -1.96
LINC00643-201ENST00000334389 SPATA31A1Q5TZJ5 1347 aa2.79□□□□□ -1.96
LINC00643-201ENST00000334389 MTFR1LQ9H019 292 aa2.79□□□□□ -1.96
LINC00643-201ENST00000334389 ANKRD31Q8N7Z5 1873 aa2.79□□□□□ -1.96
LINC00643-201ENST00000334389 EDC4Q6P2E9 1401 aaKnown RBP2.78□□□□□ -1.96
LINC00643-201ENST00000334389 LTKP29376 864 aa2.78□□□□□ -1.96
LINC00643-201ENST00000334389 GRIPAP1Q4V328 841 aa2.78□□□□□ -1.96
LINC00643-201ENST00000334389 KLRG1Q96E93 195 aa2.78□□□□□ -1.96
LINC00643-201ENST00000334389 ANO8Q9HCE9 1232 aaPredicted RBP2.78□□□□□ -1.96
LINC00643-201ENST00000334389 SNED1Q8TER0 1413 aa2.78□□□□□ -1.96
LINC00643-201ENST00000334389 ATN1P54259 1190 aaPredicted RBP2.78□□□□□ -1.97
LINC00643-201ENST00000334389 ZNF784Q8NCA9 323 aaPredicted RBP2.78□□□□□ -1.97
LINC00643-201ENST00000334389 VPS33BQ9H267 617 aa2.78□□□□□ -1.97
LINC00643-201ENST00000334389 SPON1Q9HCB6 807 aa2.78□□□□□ -1.97
LINC00643-201ENST00000334389 HCSTQ9UBK5 93 aa2.78□□□□□ -1.97
LINC00643-201ENST00000334389 WASHC2CQ9Y4E1 1318 aa2.77□□□□□ -1.97
LINC00643-201ENST00000334389 ANKRD50Q9ULJ7 1429 aa2.77□□□□□ -1.97
LINC00643-201ENST00000334389 COL11A2P13942 1736 aaPredicted RBP2.77□□□□□ -1.97
LINC00643-201ENST00000334389 BCL11BQ9C0K0 894 aaPredicted RBP2.77□□□□□ -1.97
LINC00643-201ENST00000334389 STAG3Q9UJ98 1225 aa2.77□□□□□ -1.97
LINC00643-201ENST00000334389 MYPNQ86TC9 1320 aa2.77□□□□□ -1.97
LINC00643-201ENST00000334389 KDRP35968 1356 aa2.77□□□□□ -1.97
LINC00643-201ENST00000334389 NBPF8Q3BBV2 869 aa2.77□□□□□ -1.97
LINC00643-201ENST00000334389 NBPF14Q5TI25 921 aa2.77□□□□□ -1.97
LINC00643-201ENST00000334389 BORCS6Q96GS4 357 aa2.77□□□□□ -1.97
LINC00643-201ENST00000334389 ARXQ96QS3 562 aa2.77□□□□□ -1.97
LINC00643-201ENST00000334389 CDHR2Q9BYE9 1310 aa2.77□□□□□ -1.97
LINC00643-201ENST00000334389 RPAP1Q9BWH6 1393 aaPredicted RBP2.76□□□□□ -1.97
LINC00643-201ENST00000334389 YY1P25490 414 aa2.76□□□□□ -1.97
LINC00643-201ENST00000334389 PSME1Q06323 249 aa2.76□□□□□ -1.97
LINC00643-201ENST00000334389 QTRT2Q9H974 415 aaKnown RBP2.76□□□□□ -1.97
LINC00643-201ENST00000334389 CASP8AP2Q9UKL3 1982 aa2.76□□□□□ -1.97
LINC00643-201ENST00000334389 MS4A3Q96HJ5 214 aa2.76□□□□□ -1.97
LINC00643-201ENST00000334389 LTBP2Q14767 1821 aa2.75□□□□□ -1.97
LINC00643-201ENST00000334389 FAM109BQ6ICB4 259 aaPredicted RBP2.75□□□□□ -1.97
LINC00643-201ENST00000334389 CNTNAP1P78357 1384 aa2.75□□□□□ -1.97
LINC00643-201ENST00000334389 GIGYF1O75420 1035 aaPredicted RBP2.75□□□□□ -1.97
LINC00643-201ENST00000334389 PRPF38BQ5VTL8 546 aaKnown RBP2.75□□□□□ -1.97
LINC00643-201ENST00000334389 KRT27Q7Z3Y8 459 aa2.75□□□□□ -1.97
LINC00643-201ENST00000334389 AFAP1Q8N556 730 aa2.75□□□□□ -1.97
LINC00643-201ENST00000334389 PHF12Q96QT6 1004 aa2.74□□□□□ -1.97
LINC00643-201ENST00000334389 METP08581 1390 aa2.74□□□□□ -1.97
LINC00643-201ENST00000334389 SEC24BO95487 1268 aa2.74□□□□□ -1.97
LINC00643-201ENST00000334389 PKN2Q16513 984 aaKnown RBP2.74□□□□□ -1.97
LINC00643-201ENST00000334389 FAM43BQ6ZT52 329 aaPredicted RBP2.74□□□□□ -1.97
LINC00643-201ENST00000334389 ZNF692Q9BU19 519 aaPredicted RBP2.74□□□□□ -1.97
LINC00643-201ENST00000334389 EIF2AK3Q9NZJ5 1116 aaKnown RBP2.74□□□□□ -1.97
LINC00643-201ENST00000334389 USP21Q9UK80 565 aa2.74□□□□□ -1.97
LINC00643-201ENST00000334389 LOC285556D6RIA3 1793 aa2.74□□□□□ -1.97
LINC00643-201ENST00000334389 PASKQ96RG2 1323 aa2.74□□□□□ -1.97
LINC00643-201ENST00000334389 GPRASP1Q5JY77 1395 aa2.73□□□□□ -1.97
LINC00643-201ENST00000334389 ROBO2Q9HCK4 1378 aa2.73□□□□□ -1.97
LINC00643-201ENST00000334389 AKAP11Q9UKA4 1901 aa2.73□□□□□ -1.97
LINC00643-201ENST00000334389 NUBP1P53384 320 aa2.73□□□□□ -1.97
LINC00643-201ENST00000334389 FOXK2Q01167 660 aa2.73□□□□□ -1.97
LINC00643-201ENST00000334389 TXNDC2Q86VQ3 553 aa2.73□□□□□ -1.97
LINC00643-201ENST00000334389 TMEM265A0A087WTH1 108 aa2.73□□□□□ -1.97
LINC00643-201ENST00000334389 PLEKHG3A1L390 1219 aa2.73□□□□□ -1.97
LINC00643-201ENST00000334389 CREBZFQ9NS37 354 aa2.73□□□□□ -1.97
LINC00643-201ENST00000334389 STK17AQ9UEE5 414 aa2.73□□□□□ -1.97
LINC00643-201ENST00000334389 ATF3P18847 181 aa2.72□□□□□ -1.97
LINC00643-201ENST00000334389 TGFB2P61812 414 aa2.72□□□□□ -1.97
LINC00643-201ENST00000334389 BMP2KQ9NSY1 1161 aaPredicted RBP2.72□□□□□ -1.97
LINC00643-201ENST00000334389 ANKRD36BQ8N2N9 1353 aa2.72□□□□□ -1.97
LINC00643-201ENST00000334389 CD163L1Q9NR16 1453 aa2.72□□□□□ -1.97
LINC00643-201ENST00000334389 A0A0G2JMZ2 1700 aa2.72□□□□□ -1.97
LINC00643-201ENST00000334389 LRRC37A2A6NM11 1700 aa2.72□□□□□ -1.97
LINC00643-201ENST00000334389 TOMM70O94826 608 aa2.72□□□□□ -1.97
LINC00643-201ENST00000334389 L3MBTL3Q96JM7 780 aaPredicted RBP2.72□□□□□ -1.97
LINC00643-201ENST00000334389 TTC21AQ8NDW8 1320 aa2.72□□□□□ -1.97
LINC00643-201ENST00000334389 KIF3CO14782 793 aa2.72□□□□□ -1.97
LINC00643-201ENST00000334389 NUP155O75694 1391 aa2.71□□□□□ -1.98
LINC00643-201ENST00000334389 POTEB3A0JP26 581 aa2.71□□□□□ -1.98
LINC00643-201ENST00000334389 BMP8BP34820 402 aa2.71□□□□□ -1.98
LINC00643-201ENST00000334389 SF3B2Q13435 895 aaKnown RBP2.71□□□□□ -1.98
LINC00643-201ENST00000334389 POTEBQ6S5H4 581 aa2.71□□□□□ -1.98
LINC00643-201ENST00000334389 PRO3102Q9H379 93 aa2.71□□□□□ -1.98
LINC00643-201ENST00000334389 RASSF10A6NK89 507 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms