RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 A0A1W2PP64 1363 aa17.66■□□□□ 0.42
TCOF1-201ENST00000323668 PRKCSHP14314 528 aaPredicted RBP17.66■□□□□ 0.42
TCOF1-201ENST00000323668 CCDC73Q6ZRK6 1079 aa17.66■□□□□ 0.42
TCOF1-201ENST00000323668 TRIM35Q9UPQ4 493 aa17.66■□□□□ 0.42
TCOF1-201ENST00000323668 CWC27Q6UX04 472 aaKnown RBP17.65■□□□□ 0.42
TCOF1-201ENST00000323668 NUTM1Q86Y26 1132 aa17.65■□□□□ 0.42
TCOF1-201ENST00000323668 WDR7Q9Y4E6 1490 aa17.65■□□□□ 0.42
TCOF1-201ENST00000323668 GNAT3A8MTJ3 354 aa17.65■□□□□ 0.42
TCOF1-201ENST00000323668 PLEKHO1Q53GL0 409 aaPredicted RBP17.65■□□□□ 0.42
TCOF1-201ENST00000323668 ABCC2Q92887 1545 aa17.65■□□□□ 0.42
TCOF1-201ENST00000323668 ZBTB7BO15156 539 aaPredicted RBP17.65■□□□□ 0.42
TCOF1-201ENST00000323668 PHACTR3Q96KR7 559 aa17.65■□□□□ 0.42
TCOF1-201ENST00000323668 TRIM5Q9C035 493 aa17.65■□□□□ 0.42
TCOF1-201ENST00000323668 CCDC192P0DO97 292 aa17.64■□□□□ 0.42
TCOF1-201ENST00000323668 DCTPP1Q9H773 170 aa17.64■□□□□ 0.41
TCOF1-201ENST00000323668 KIF1BPQ96EK5 621 aa17.64■□□□□ 0.41
TCOF1-201ENST00000323668 MEIS3Q99687 375 aa17.64■□□□□ 0.41
TCOF1-201ENST00000323668 PLA2R1Q13018 1463 aa17.64■□□□□ 0.41
TCOF1-201ENST00000323668 KRT85P78386 507 aa17.63■□□□□ 0.41
TCOF1-201ENST00000323668 UQCRHLA0A096LP55 91 aa17.63■□□□□ 0.41
TCOF1-201ENST00000323668 UQCRHP07919 91 aa17.63■□□□□ 0.41
TCOF1-201ENST00000323668 LARP1BQ659C4 914 aaKnown RBP17.63■□□□□ 0.41
TCOF1-201ENST00000323668 RAPGEF4Q8WZA2 1011 aa17.63■□□□□ 0.41
TCOF1-201ENST00000323668 ZNF518AQ6AHZ1 1483 aa17.63■□□□□ 0.41
TCOF1-201ENST00000323668 CPLX1O14810 134 aa17.63■□□□□ 0.41
TCOF1-201ENST00000323668 CPLX2Q6PUV4 134 aaKnown RBP17.63■□□□□ 0.41
TCOF1-201ENST00000323668 ZSCAN31Q96LW9 406 aaPredicted RBP17.63■□□□□ 0.41
TCOF1-201ENST00000323668 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.63■□□□□ 0.41
TCOF1-201ENST00000323668 RAB11FIP3O75154 756 aa17.63■□□□□ 0.41
TCOF1-201ENST00000323668 C16orf71Q8IYS4 520 aaPredicted RBP17.62■□□□□ 0.41
TCOF1-201ENST00000323668 JAKMIP1Q96N16 626 aaKnown RBP17.62■□□□□ 0.41
TCOF1-201ENST00000323668 PDRG1Q9NUG6 133 aa17.62■□□□□ 0.41
TCOF1-201ENST00000323668 ABCA8O94911 1581 aa17.62■□□□□ 0.41
TCOF1-201ENST00000323668 FLIIQ13045 1269 aa17.62■□□□□ 0.41
TCOF1-201ENST00000323668 SBNO2Q9Y2G9 1366 aa17.62■□□□□ 0.41
TCOF1-201ENST00000323668 KDM5DQ9BY66 1539 aa17.61■□□□□ 0.41
TCOF1-201ENST00000323668 ANKRD1Q15327 319 aa17.61■□□□□ 0.41
TCOF1-201ENST00000323668 LRRFIP2Q9Y608 721 aaKnown RBP17.61■□□□□ 0.41
TCOF1-201ENST00000323668 ASXL2Q76L83 1435 aa17.61■□□□□ 0.41
TCOF1-201ENST00000323668 ZSCAN23Q3MJ62 389 aa17.61■□□□□ 0.41
TCOF1-201ENST00000323668 SPC24Q8NBT2 197 aa17.61■□□□□ 0.41
TCOF1-201ENST00000323668 NEUROD6Q96NK8 337 aa17.61■□□□□ 0.41
TCOF1-201ENST00000323668 ZNF530Q6P9A1 599 aaPredicted RBP17.61■□□□□ 0.41
TCOF1-201ENST00000323668 ZMYM3Q14202 1370 aa17.61■□□□□ 0.41
TCOF1-201ENST00000323668 GLRX3O76003 335 aaKnown RBP17.6■□□□□ 0.41
TCOF1-201ENST00000323668 FOSBP53539 338 aa17.6■□□□□ 0.41
TCOF1-201ENST00000323668 PLEKHM2Q8IWE5 1019 aa17.6■□□□□ 0.41
TCOF1-201ENST00000323668 TAF7Q15545 349 aaPredicted RBP17.6■□□□□ 0.41
TCOF1-201ENST00000323668 BLOC1S2Q6QNY1 142 aa17.6■□□□□ 0.41
TCOF1-201ENST00000323668 TOMM22Q9NS69 142 aa17.6■□□□□ 0.41
TCOF1-201ENST00000323668 CASTP20810 708 aaKnown RBP17.59■□□□□ 0.41
TCOF1-201ENST00000323668 PDE1AP54750 535 aa17.59■□□□□ 0.41
TCOF1-201ENST00000323668 XPCQ01831 940 aaPredicted RBP17.59■□□□□ 0.41
TCOF1-201ENST00000323668 TMX3Q96JJ7 454 aa17.59■□□□□ 0.41
TCOF1-201ENST00000323668 SDF4Q9BRK5 362 aa17.59■□□□□ 0.41
TCOF1-201ENST00000323668 RBM27Q9P2N5 1060 aaKnown RBP17.59■□□□□ 0.41
TCOF1-201ENST00000323668 PRDM15P57071 1507 aaPredicted RBP17.59■□□□□ 0.41
TCOF1-201ENST00000323668 AACSQ86V21 672 aa17.59■□□□□ 0.41
TCOF1-201ENST00000323668 TSHZ3Q63HK5 1081 aa17.59■□□□□ 0.41
TCOF1-201ENST00000323668 RRAGDQ9NQL2 400 aaPredicted RBP17.59■□□□□ 0.41
TCOF1-201ENST00000323668 TTC21BQ7Z4L5 1316 aa17.58■□□□□ 0.4
TCOF1-201ENST00000323668 PDIA4P13667 645 aaKnown RBP17.58■□□□□ 0.4
TCOF1-201ENST00000323668 TNMDQ9H2S6 317 aa17.58■□□□□ 0.4
TCOF1-201ENST00000323668 SAMD9LQ8IVG5 1584 aa17.58■□□□□ 0.4
TCOF1-201ENST00000323668 ATP10AO60312 1499 aa17.57■□□□□ 0.4
TCOF1-201ENST00000323668 CCDC183Q5T5S1 534 aa17.57■□□□□ 0.4
TCOF1-201ENST00000323668 GDPD2Q9HCC8 539 aa17.57■□□□□ 0.4
TCOF1-201ENST00000323668 NLRP2Q9NX02 1062 aa17.57■□□□□ 0.4
TCOF1-201ENST00000323668 FBXW7Q969H0 707 aa17.57■□□□□ 0.4
TCOF1-201ENST00000323668 LIMCH1Q9UPQ0 1083 aa17.57■□□□□ 0.4
TCOF1-201ENST00000323668 ZFYVE9O95405 1425 aa17.57■□□□□ 0.4
TCOF1-201ENST00000323668 SIL1Q9H173 461 aa17.56■□□□□ 0.4
TCOF1-201ENST00000323668 KINO60870 393 aaKnown RBP17.56■□□□□ 0.4
TCOF1-201ENST00000323668 MCM5P33992 734 aa17.56■□□□□ 0.4
TCOF1-201ENST00000323668 TRDNQ13061 729 aa17.56■□□□□ 0.4
TCOF1-201ENST00000323668 HSP90AB2PQ58FF8 381 aa17.56■□□□□ 0.4
TCOF1-201ENST00000323668 ZRANB1Q9UGI0 708 aa17.56■□□□□ 0.4
TCOF1-201ENST00000323668 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.56■□□□□ 0.4
TCOF1-201ENST00000323668 STK3Q13188 491 aa17.56■□□□□ 0.4
TCOF1-201ENST00000323668 CEP85Q6P2H3 762 aa17.56■□□□□ 0.4
TCOF1-201ENST00000323668 SYNE3Q6ZMZ3 975 aa17.56■□□□□ 0.4
TCOF1-201ENST00000323668 CCDC83Q8IWF9 413 aa17.56■□□□□ 0.4
TCOF1-201ENST00000323668 DNAJC2Q99543 621 aaKnown RBP17.56■□□□□ 0.4
TCOF1-201ENST00000323668 PPP6R1Q9UPN7 881 aa17.56■□□□□ 0.4
TCOF1-201ENST00000323668 NAT10Q9H0A0 1025 aaKnown RBP17.56■□□□□ 0.4
TCOF1-201ENST00000323668 USP26Q9BXU7 913 aa17.55■□□□□ 0.4
TCOF1-201ENST00000323668 ERVK-7P63135 1459 aa17.55■□□□□ 0.4
TCOF1-201ENST00000323668 LRSAM1Q6UWE0 723 aa17.55■□□□□ 0.4
TCOF1-201ENST00000323668 THEMISQ8N1K5 641 aaPredicted RBP17.55■□□□□ 0.4
TCOF1-201ENST00000323668 NUP62CLQ9H1M0 184 aa17.55■□□□□ 0.4
TCOF1-201ENST00000323668 ATP7AQ04656 1500 aa17.55■□□□□ 0.4
TCOF1-201ENST00000323668 BTBD11A6QL63 1104 aa17.55■□□□□ 0.4
TCOF1-201ENST00000323668 TPD52L1Q16890 204 aaPredicted RBP17.55■□□□□ 0.4
TCOF1-201ENST00000323668 HOMER1Q86YM7 354 aa17.55■□□□□ 0.4
TCOF1-201ENST00000323668 SYNMO15061 1565 aa17.55■□□□□ 0.4
TCOF1-201ENST00000323668 ESCO1Q5FWF5 840 aa17.54■□□□□ 0.4
TCOF1-201ENST00000323668 PRPF40BQ6NWY9 871 aaKnown RBP17.54■□□□□ 0.4
TCOF1-201ENST00000323668 TRIM29Q14134 588 aa17.54■□□□□ 0.4
TCOF1-201ENST00000323668 NPHP1O15259 732 aa17.54■□□□□ 0.4
TCOF1-201ENST00000323668 KRT24Q2M2I5 525 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms