RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 SMC5Q8IY18 1101 aa19.38■□□□□ 0.69
SHROOM1-201ENST00000319854 ABTB2Q8N961 1025 aa19.38■□□□□ 0.69
SHROOM1-201ENST00000319854 MTHFSDQ2M296 383 aaKnown RBP19.38■□□□□ 0.69
SHROOM1-201ENST00000319854 CHD1LQ86WJ1 897 aa19.38■□□□□ 0.69
SHROOM1-201ENST00000319854 RTF1Q92541 710 aaKnown RBP19.38■□□□□ 0.69
SHROOM1-201ENST00000319854 XPCQ01831 940 aaPredicted RBP19.36■□□□□ 0.69
SHROOM1-201ENST00000319854 CHMP5Q9NZZ3 219 aa19.36■□□□□ 0.69
SHROOM1-201ENST00000319854 LMOD2Q6P5Q4 547 aa19.36■□□□□ 0.69
SHROOM1-201ENST00000319854 SIRT2Q8IXJ6 389 aa19.36■□□□□ 0.69
SHROOM1-201ENST00000319854 EYA1Q99502 592 aa19.36■□□□□ 0.69
SHROOM1-201ENST00000319854 GAS2L3Q86XJ1 694 aa19.35■□□□□ 0.69
SHROOM1-201ENST00000319854 C22orf23Q9BZE7 217 aa19.35■□□□□ 0.69
SHROOM1-201ENST00000319854 TSPYL4Q9UJ04 414 aa19.35■□□□□ 0.69
SHROOM1-201ENST00000319854 TBX22Q9Y458 520 aa19.35■□□□□ 0.69
SHROOM1-201ENST00000319854 F6X3S4 739 aa19.35■□□□□ 0.69
SHROOM1-201ENST00000319854 SLC4A2P04920 1241 aa19.35■□□□□ 0.69
SHROOM1-201ENST00000319854 NUCB1Q02818 461 aa19.35■□□□□ 0.69
SHROOM1-201ENST00000319854 ZNF428Q96B54 188 aa19.32■□□□□ 0.68
SHROOM1-201ENST00000319854 API5Q9BZZ5 524 aaKnown RBP19.32■□□□□ 0.68
SHROOM1-201ENST00000319854 ITSN1Q15811 1721 aa19.32■□□□□ 0.68
SHROOM1-201ENST00000319854 G2E3Q7L622 706 aa19.31■□□□□ 0.68
SHROOM1-201ENST00000319854 PODXL2Q9NZ53 605 aa19.31■□□□□ 0.68
SHROOM1-201ENST00000319854 OVOS2A0A0J9YW53 1432 aa19.31■□□□□ 0.68
SHROOM1-201ENST00000319854 OVOS2Q6IE36 1432 aa19.31■□□□□ 0.68
SHROOM1-201ENST00000319854 C16orf71Q8IYS4 520 aaPredicted RBP19.31■□□□□ 0.68
SHROOM1-201ENST00000319854 CHL1O00533 1208 aa19.3■□□□□ 0.68
SHROOM1-201ENST00000319854 DLG5Q8TDM6 1919 aa19.3■□□□□ 0.68
SHROOM1-201ENST00000319854 ABCC4O15439 1325 aa19.29■□□□□ 0.68
SHROOM1-201ENST00000319854 MON2Q7Z3U7 1717 aa19.29■□□□□ 0.68
SHROOM1-201ENST00000319854 ARHGAP45Q92619 1136 aa19.29■□□□□ 0.68
SHROOM1-201ENST00000319854 C3P01024 1663 aa19.29■□□□□ 0.68
SHROOM1-201ENST00000319854 SMARCA5O60264 1052 aaPredicted RBP19.29■□□□□ 0.68
SHROOM1-201ENST00000319854 ESCO1Q5FWF5 840 aa19.29■□□□□ 0.68
SHROOM1-201ENST00000319854 MEIS3Q99687 375 aa19.29■□□□□ 0.68
SHROOM1-201ENST00000319854 SETD1BQ9UPS6 1966 aaKnown RBP19.27■□□□□ 0.68
SHROOM1-201ENST00000319854 FOXD4L1Q9NU39 408 aa19.27■□□□□ 0.67
SHROOM1-201ENST00000319854 OTUD7AQ8TE49 926 aaPredicted RBP19.26■□□□□ 0.67
SHROOM1-201ENST00000319854 BRPF1P55201 1214 aaPredicted RBP19.26■□□□□ 0.67
SHROOM1-201ENST00000319854 FLT4P35916 1363 aa19.26■□□□□ 0.67
SHROOM1-201ENST00000319854 RGPD8O14715 1765 aaPredicted RBP19.25■□□□□ 0.67
SHROOM1-201ENST00000319854 TTC21AQ8NDW8 1320 aa19.25■□□□□ 0.67
SHROOM1-201ENST00000319854 AKAP12Q02952 1782 aa19.25■□□□□ 0.67
SHROOM1-201ENST00000319854 HOXC9P31274 260 aa19.25■□□□□ 0.67
SHROOM1-201ENST00000319854 TRIM44Q96DX7 344 aaPredicted RBP19.25■□□□□ 0.67
SHROOM1-201ENST00000319854 PSME1Q06323 249 aa19.24■□□□□ 0.67
SHROOM1-201ENST00000319854 GCC1Q96CN9 775 aa19.24■□□□□ 0.67
SHROOM1-201ENST00000319854 KNDC1Q76NI1 1749 aa19.24■□□□□ 0.67
SHROOM1-201ENST00000319854 PTCH1Q13635 1447 aa19.24■□□□□ 0.67
SHROOM1-201ENST00000319854 DDX11L8A8MPP1 907 aa19.24■□□□□ 0.67
SHROOM1-201ENST00000319854 DDIT3P35638 169 aa19.24■□□□□ 0.67
SHROOM1-201ENST00000319854 TNPO1Q92973 898 aaKnown RBP19.24■□□□□ 0.67
SHROOM1-201ENST00000319854 RIMS1Q86UR5 1692 aaKnown RBP19.24■□□□□ 0.67
SHROOM1-201ENST00000319854 CHMP4BQ9H444 224 aaKnown RBP19.24■□□□□ 0.67
SHROOM1-201ENST00000319854 PEAK1Q9H792 1746 aa19.23■□□□□ 0.67
SHROOM1-201ENST00000319854 MSH6P52701 1360 aa19.23■□□□□ 0.67
SHROOM1-201ENST00000319854 PHF8Q9UPP1 1060 aa19.23■□□□□ 0.67
SHROOM1-201ENST00000319854 PIK3R4Q99570 1358 aa19.23■□□□□ 0.67
SHROOM1-201ENST00000319854 SBNO1A3KN83 1393 aa19.23■□□□□ 0.67
SHROOM1-201ENST00000319854 FKBP5Q13451 457 aaPredicted RBP19.22■□□□□ 0.67
SHROOM1-201ENST00000319854 ANKLE2Q86XL3 938 aa19.22■□□□□ 0.67
SHROOM1-201ENST00000319854 USP31Q70CQ4 1352 aa19.22■□□□□ 0.67
SHROOM1-201ENST00000319854 HSCBQ8IWL3 235 aa19.22■□□□□ 0.67
SHROOM1-201ENST00000319854 EIF2S2P20042 333 aaKnown RBP19.21■□□□□ 0.67
SHROOM1-201ENST00000319854 TBC1D9Q6ZT07 1266 aa19.21■□□□□ 0.67
SHROOM1-201ENST00000319854 KIAA1211Q6ZU35 1233 aa19.21■□□□□ 0.67
SHROOM1-201ENST00000319854 LRRC59Q96AG4 307 aaKnown RBP19.21■□□□□ 0.67
SHROOM1-201ENST00000319854 RBM42Q9BTD8 480 aaKnown RBP19.21■□□□□ 0.67
SHROOM1-201ENST00000319854 DIP2AQ14689 1571 aa19.21■□□□□ 0.67
SHROOM1-201ENST00000319854 GAS2L2Q8NHY3 880 aa19.2■□□□□ 0.66
SHROOM1-201ENST00000319854 STK31Q9BXU1 1019 aa19.2■□□□□ 0.66
SHROOM1-201ENST00000319854 CEP170BQ9Y4F5 1589 aaPredicted RBP19.2■□□□□ 0.66
SHROOM1-201ENST00000319854 TSHZ3Q63HK5 1081 aa19.2■□□□□ 0.66
SHROOM1-201ENST00000319854 SSH2Q76I76 1423 aa19.2■□□□□ 0.66
SHROOM1-201ENST00000319854 GNAT3A8MTJ3 354 aa19.2■□□□□ 0.66
SHROOM1-201ENST00000319854 ORAI2Q96SN7 254 aa19.2■□□□□ 0.66
SHROOM1-201ENST00000319854 INTS3Q68E01 1043 aaKnown RBP19.19■□□□□ 0.66
SHROOM1-201ENST00000319854 IL17REQ8NFR9 667 aa19.19■□□□□ 0.66
SHROOM1-201ENST00000319854 BMP2KLQ5H9B9 411 aa19.18■□□□□ 0.66
SHROOM1-201ENST00000319854 CEP85Q6P2H3 762 aa19.18■□□□□ 0.66
SHROOM1-201ENST00000319854 IGSF1Q8N6C5 1336 aa19.18■□□□□ 0.66
SHROOM1-201ENST00000319854 TPM2P07951 284 aa19.18■□□□□ 0.66
SHROOM1-201ENST00000319854 PDCL3Q9H2J4 239 aa19.18■□□□□ 0.66
SHROOM1-201ENST00000319854 CRB1P82279 1406 aa19.18■□□□□ 0.66
SHROOM1-201ENST00000319854 EXOC6BQ9Y2D4 811 aa19.18■□□□□ 0.66
SHROOM1-201ENST00000319854 NCOA3Q9Y6Q9 1424 aa19.17■□□□□ 0.66
SHROOM1-201ENST00000319854 GSPT1P15170 499 aaKnown RBP19.17■□□□□ 0.66
SHROOM1-201ENST00000319854 ISY1Q9ULR0 285 aaKnown RBP19.17■□□□□ 0.66
SHROOM1-201ENST00000319854 ARHGEF10O15013 1369 aa19.17■□□□□ 0.66
SHROOM1-201ENST00000319854 FER1L4A9Z1Z3 1794 aa19.17■□□□□ 0.66
SHROOM1-201ENST00000319854 HAP1P54257 671 aaPredicted RBP19.17■□□□□ 0.66
SHROOM1-201ENST00000319854 ANXA1P04083 346 aa19.16■□□□□ 0.66
SHROOM1-201ENST00000319854 RBM10P98175 930 aaKnown RBP19.16■□□□□ 0.66
SHROOM1-201ENST00000319854 PLEKHM2Q8IWE5 1019 aa19.16■□□□□ 0.66
SHROOM1-201ENST00000319854 NBPF6Q5VWK0 638 aa19.16■□□□□ 0.66
SHROOM1-201ENST00000319854 NBPF4Q96M43 638 aa19.16■□□□□ 0.66
SHROOM1-201ENST00000319854 DCTPP1Q9H773 170 aa19.16■□□□□ 0.66
SHROOM1-201ENST00000319854 ARHGAP23Q9P227 1491 aa19.15■□□□□ 0.66
SHROOM1-201ENST00000319854 ANKRD44Q8N8A2 993 aa19.15■□□□□ 0.66
SHROOM1-201ENST00000319854 LGR6Q9HBX8 967 aa19.15■□□□□ 0.66
SHROOM1-201ENST00000319854 SLIT1O75093 1534 aa19.14■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms