RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 TNMDQ9H2S6 317 aa15.15■□□□□ 0.02
PTCD1-201ENST00000292478 GLRX3O76003 335 aaKnown RBP15.15■□□□□ 0.02
PTCD1-201ENST00000292478 TAF7Q15545 349 aaPredicted RBP15.15■□□□□ 0.02
PTCD1-201ENST00000292478 MPHOSPH8Q99549 860 aa15.15■□□□□ 0.02
PTCD1-201ENST00000292478 PRDM11Q9NQV5 511 aa15.15■□□□□ 0.02
PTCD1-201ENST00000292478 RRP12Q5JTH9 1297 aaKnown RBP15.15■□□□□ 0.02
PTCD1-201ENST00000292478 SSH1Q8WYL5 1049 aa15.15■□□□□ 0.02
PTCD1-201ENST00000292478 AMER1Q5JTC6 1135 aaPredicted RBP15.14■□□□□ 0.01
PTCD1-201ENST00000292478 C14orf93Q9H972 538 aaKnown RBP15.14■□□□□ 0.01
PTCD1-201ENST00000292478 IL16Q14005 1332 aa15.14■□□□□ 0.01
PTCD1-201ENST00000292478 WASLO00401 505 aaPredicted RBP15.14■□□□□ 0.01
PTCD1-201ENST00000292478 LARP1Q6PKG0 1096 aaKnown RBP15.14■□□□□ 0.01
PTCD1-201ENST00000292478 DHX29Q7Z478 1369 aaKnown RBP15.14■□□□□ 0.01
PTCD1-201ENST00000292478 DDX54Q8TDD1 881 aaKnown RBP15.14■□□□□ 0.01
PTCD1-201ENST00000292478 PTPRCP08575 1304 aa15.14■□□□□ 0.01
PTCD1-201ENST00000292478 TTC21BQ7Z4L5 1316 aa15.14■□□□□ 0.01
PTCD1-201ENST00000292478 ADGRF5Q8IZF2 1346 aa15.14■□□□□ 0.01
PTCD1-201ENST00000292478 NOL7Q9UMY1 257 aaKnown RBP15.14■□□□□ 0.01
PTCD1-201ENST00000292478 IL27Q8NEV9 243 aa15.14■□□□□ 0.01
PTCD1-201ENST00000292478 JAKMIP1Q96N16 626 aaKnown RBP15.14■□□□□ 0.01
PTCD1-201ENST00000292478 GRPEL1Q9HAV7 217 aa15.14■□□□□ 0.01
PTCD1-201ENST00000292478 PLEKHH1Q9ULM0 1364 aa15.13■□□□□ 0.01
PTCD1-201ENST00000292478 FAM177BA6PVY3 158 aa15.13■□□□□ 0.01
PTCD1-201ENST00000292478 MX1P20591 662 aa15.13■□□□□ 0.01
PTCD1-201ENST00000292478 WASF1Q92558 559 aa15.13■□□□□ 0.01
PTCD1-201ENST00000292478 CBFA2T2O43439 604 aa15.13■□□□□ 0.01
PTCD1-201ENST00000292478 DENND4BO75064 1496 aaPredicted RBP15.13■□□□□ 0.01
PTCD1-201ENST00000292478 NUP160Q12769 1436 aa15.12■□□□□ 0.01
PTCD1-201ENST00000292478 AKAP2Q9Y2D5 859 aa15.12■□□□□ 0.01
PTCD1-201ENST00000292478 ANKRD36BQ8N2N9 1353 aa15.12■□□□□ 0.01
PTCD1-201ENST00000292478 CT47A1Q5JQC4 288 aaPredicted RBP15.12■□□□□ 0.01
PTCD1-201ENST00000292478 ME1P48163 572 aa15.12■□□□□ 0.01
PTCD1-201ENST00000292478 CWC27Q6UX04 472 aaKnown RBP15.12■□□□□ 0.01
PTCD1-201ENST00000292478 WAPLQ7Z5K2 1190 aa15.12■□□□□ 0.01
PTCD1-201ENST00000292478 MYO6Q9UM54 1294 aa15.12■□□□□ 0.01
PTCD1-201ENST00000292478 UNC13AQ9UPW8 1703 aa15.12■□□□□ 0.01
PTCD1-201ENST00000292478 IKQ13123 557 aaPredicted RBP15.12■□□□□ 0.01
PTCD1-201ENST00000292478 STIM1Q13586 685 aa15.12■□□□□ 0.01
PTCD1-201ENST00000292478 STARD3NLO95772 234 aa15.11■□□□□ 0.01
PTCD1-201ENST00000292478 MAP4K4O95819 1239 aaPredicted RBP15.11■□□□□ 0.01
PTCD1-201ENST00000292478 FANCAO15360 1455 aa15.11■□□□□ 0.01
PTCD1-201ENST00000292478 GPATCH8Q9UKJ3 1502 aaKnown RBP15.11■□□□□ 0.01
PTCD1-201ENST00000292478 CCAR1Q8IX12 1150 aaKnown RBP15.11■□□□□ 0.01
PTCD1-201ENST00000292478 SPATA32Q96LK8 384 aa15.11■□□□□ 0.01
PTCD1-201ENST00000292478 ATP2B1P20020 1258 aa15.11■□□□□ 0.01
PTCD1-201ENST00000292478 STK3Q13188 491 aa15.11■□□□□ 0.01
PTCD1-201ENST00000292478 TXLNBQ8N3L3 684 aa15.11■□□□□ 0.01
PTCD1-201ENST00000292478 IL1RAPL2Q9NP60 686 aa15.11■□□□□ 0.01
PTCD1-201ENST00000292478 NOS1P29475 1434 aa15.11■□□□□ 0.01
PTCD1-201ENST00000292478 UGGT2Q9NYU1 1516 aa15.1■□□□□ 0.01
PTCD1-201ENST00000292478 FKBP4Q02790 459 aaKnown RBP eCLIP15.1■□□□□ 0.01
PTCD1-201ENST00000292478 CAGE1Q8TC20 777 aa15.1■□□□□ 0.01
PTCD1-201ENST00000292478 MCM10Q7L590 875 aa15.1■□□□□ 0.01
PTCD1-201ENST00000292478 ZNHIT6Q9NWK9 470 aaKnown RBP15.1■□□□□ 0.01
PTCD1-201ENST00000292478 ITSN2Q9NZM3 1697 aa15.1■□□□□ 0.01
PTCD1-201ENST00000292478 IMMTQ16891 758 aaKnown RBP15.1■□□□□ 0.01
PTCD1-201ENST00000292478 RALGAPBQ86X10 1494 aa15.1■□□□□ 0.01
PTCD1-201ENST00000292478 CEBPZQ03701 1054 aaKnown RBP15.09■□□□□ 0.01
PTCD1-201ENST00000292478 SERPINC1P01008 464 aa15.09■□□□□ 0.01
PTCD1-201ENST00000292478 NME9Q86XW9 330 aa15.09■□□□□ 0.01
PTCD1-201ENST00000292478 SH2B1Q9NRF2 756 aaPredicted RBP15.09■□□□□ 0.01
PTCD1-201ENST00000292478 RAPGEF6Q8TEU7 1601 aa15.09■□□□□ 0.01
PTCD1-201ENST00000292478 ODF2Q5BJF6 829 aa15.09■□□□□ 0.01
PTCD1-201ENST00000292478 NUP62CLQ9H1M0 184 aa15.09■□□□□ 0.01
PTCD1-201ENST00000292478 IDI1Q13907 227 aa15.09■□□□□ 0.01
PTCD1-201ENST00000292478 VSIG10Q8N0Z9 540 aa15.09■□□□□ 0.01
PTCD1-201ENST00000292478 LUC7LQ9NQ29 371 aaKnown RBP15.09■□□□□ 0.01
PTCD1-201ENST00000292478 RDXP35241 583 aaKnown RBP15.08■□□□□ 0.01
PTCD1-201ENST00000292478 IGHMBP2P38935 993 aaKnown RBP15.08■□□□□ 0.01
PTCD1-201ENST00000292478 SOGA3Q5TF21 947 aa15.08■□□□□ 0.01
PTCD1-201ENST00000292478 EXOC6BQ9Y2D4 811 aa15.08■□□□□ 0.01
PTCD1-201ENST00000292478 U3KPZ7 1027 aaPredicted RBP15.08■□□□□ 0.01
PTCD1-201ENST00000292478 DUOX2Q9NRD8 1548 aa15.08■□□□□ 0.01
PTCD1-201ENST00000292478 CEP57L1Q8IYX8 460 aa15.08■□□□□ 0
PTCD1-201ENST00000292478 FMNL2Q96PY5 1086 aa15.08■□□□□ 0
PTCD1-201ENST00000292478 MTMR7Q9Y216 660 aa15.08■□□□□ 0
PTCD1-201ENST00000292478 UBAC1Q9BSL1 405 aa15.08■□□□□ 0
PTCD1-201ENST00000292478 PPFIBP1Q86W92 1011 aa15.08■□□□□ 0
PTCD1-201ENST00000292478 HYPKQ9NX55 129 aa15.08■□□□□ 0
PTCD1-201ENST00000292478 KRI1Q8N9T8 703 aaKnown RBP15.07■□□□□ 0
PTCD1-201ENST00000292478 PHF8Q9UPP1 1060 aa15.07■□□□□ 0
PTCD1-201ENST00000292478 SMTNL1A8MU46 457 aa15.07■□□□□ 0
PTCD1-201ENST00000292478 HMGB1P09429 215 aaKnown RBP15.07■□□□□ 0
PTCD1-201ENST00000292478 NUTM1Q86Y26 1132 aa15.07■□□□□ 0
PTCD1-201ENST00000292478 KDM4AO75164 1064 aa15.07■□□□□ 0
PTCD1-201ENST00000292478 KRT18P05783 430 aaKnown RBP15.07■□□□□ 0
PTCD1-201ENST00000292478 TDO2P48775 406 aa15.07■□□□□ 0
PTCD1-201ENST00000292478 NOM1Q5C9Z4 860 aaKnown RBP15.07■□□□□ 0
PTCD1-201ENST00000292478 THUMPD2Q9BTF0 503 aaKnown RBP15.07■□□□□ 0
PTCD1-201ENST00000292478 CASTP20810 708 aaKnown RBP15.06■□□□□ 0
PTCD1-201ENST00000292478 DISP3Q9P2K9 1392 aa15.06■□□□□ 0
PTCD1-201ENST00000292478 CEP131Q9UPN4 1083 aa15.06■□□□□ 0
PTCD1-201ENST00000292478 DNAAF4Q8WXU2 420 aa15.06■□□□□ 0
PTCD1-201ENST00000292478 DBF4Q9UBU7 674 aaPredicted RBP15.06■□□□□ 0
PTCD1-201ENST00000292478 KDM5BQ9UGL1 1544 aa15.06■□□□□ 0
PTCD1-201ENST00000292478 HSP90AB3PQ58FF7 597 aa15.06■□□□□ 0
PTCD1-201ENST00000292478 EMILIN1Q9Y6C2 1016 aa15.06■□□□□ 0
PTCD1-201ENST00000292478 C20orf194Q5TEA3 1177 aa15.05■□□□□ 0
PTCD1-201ENST00000292478 AMOTL2Q9Y2J4 779 aa15.05■□□□□ -0
PTCD1-201ENST00000292478 NUP133Q8WUM0 1156 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms