RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 FOXD4L5Q5VV16 416 aaPredicted RBP6.95□□□□□ -1.3
CD44-202ENST00000278385 FOXD4L4Q8WXT5 416 aaPredicted RBP6.95□□□□□ -1.3
CD44-202ENST00000278385 ZNF428Q96B54 188 aa6.95□□□□□ -1.3
CD44-202ENST00000278385 ITPKCQ96DU7 683 aa6.95□□□□□ -1.3
CD44-202ENST00000278385 TSEN34Q9BSV6 310 aaKnown RBP6.95□□□□□ -1.3
CD44-202ENST00000278385 DOLKQ9UPQ8 538 aa6.95□□□□□ -1.3
CD44-202ENST00000278385 BAZ1BQ9UIG0 1483 aaKnown RBP6.94□□□□□ -1.3
CD44-202ENST00000278385 TRAK2O60296 914 aa6.94□□□□□ -1.3
CD44-202ENST00000278385 GPR37L1O60883 481 aa6.94□□□□□ -1.3
CD44-202ENST00000278385 NR3C2P08235 984 aa6.94□□□□□ -1.3
CD44-202ENST00000278385 TIMP2P16035 220 aa6.94□□□□□ -1.3
CD44-202ENST00000278385 MAP7D1Q3KQU3 841 aa6.94□□□□□ -1.3
CD44-202ENST00000278385 AAASQ9NRG9 546 aa6.94□□□□□ -1.3
CD44-202ENST00000278385 HMGXB3Q12766 1538 aa6.94□□□□□ -1.3
CD44-202ENST00000278385 E9PSI1 815 aa6.93□□□□□ -1.3
CD44-202ENST00000278385 ST8SIA5O15466 376 aa6.93□□□□□ -1.3
CD44-202ENST00000278385 LZTS3O60299 673 aaPredicted RBP6.93□□□□□ -1.3
CD44-202ENST00000278385 BMP2P12643 396 aa6.93□□□□□ -1.3
CD44-202ENST00000278385 CC2D2BQ6DHV5 1058 aa6.93□□□□□ -1.3
CD44-202ENST00000278385 KIFC2Q96AC6 838 aa6.93□□□□□ -1.3
CD44-202ENST00000278385 ZFAND3Q9H8U3 227 aa6.93□□□□□ -1.3
CD44-202ENST00000278385 MROH2BQ7Z745 1585 aa6.92□□□□□ -1.3
CD44-202ENST00000278385 PEG3Q9GZU2 1588 aa6.92□□□□□ -1.3
CD44-202ENST00000278385 SKIP12755 728 aa6.92□□□□□ -1.3
CD44-202ENST00000278385 EML3Q32P44 896 aa6.92□□□□□ -1.3
CD44-202ENST00000278385 OXLD1Q5BKU9 147 aa6.92□□□□□ -1.3
CD44-202ENST00000278385 CYP2U1Q7Z449 544 aa6.92□□□□□ -1.3
CD44-202ENST00000278385 ZNF784Q8NCA9 323 aaPredicted RBP6.92□□□□□ -1.3
CD44-202ENST00000278385 CYLDQ9NQC7 956 aa6.92□□□□□ -1.3
CD44-202ENST00000278385 ZNF777Q9ULD5 760 aaPredicted RBP6.92□□□□□ -1.3
CD44-202ENST00000278385 RBM19Q9Y4C8 960 aaKnown RBP6.92□□□□□ -1.3
CD44-202ENST00000278385 GTF2E1P29083 439 aaPredicted RBP6.91□□□□□ -1.3
CD44-202ENST00000278385 MRPL14Q6P1L8 145 aaKnown RBP6.91□□□□□ -1.3
CD44-202ENST00000278385 NFATC2IPQ8NCF5 419 aa6.91□□□□□ -1.3
CD44-202ENST00000278385 GLMNQ92990 594 aa6.91□□□□□ -1.3
CD44-202ENST00000278385 GZF1Q9H116 711 aaPredicted RBP6.91□□□□□ -1.3
CD44-202ENST00000278385 ALG2Q9H553 416 aa6.91□□□□□ -1.3
CD44-202ENST00000278385 ATP13A2Q9NQ11 1180 aa6.91□□□□□ -1.3
CD44-202ENST00000278385 TMPRSS4Q9NRS4 437 aa6.91□□□□□ -1.3
CD44-202ENST00000278385 POM121CA8CG34 1229 aa6.9□□□□□ -1.3
CD44-202ENST00000278385 ATP5J2-PTCD1G3V325 749 aa6.9□□□□□ -1.3
CD44-202ENST00000278385 C6orf118Q5T5N4 469 aa6.9□□□□□ -1.3
CD44-202ENST00000278385 FNBP4Q8N3X1 1017 aaPredicted RBP6.9□□□□□ -1.3
CD44-202ENST00000278385 PLPP7Q8NBV4 271 aa6.9□□□□□ -1.3
CD44-202ENST00000278385 ERCC6Q03468 1493 aa6.9□□□□□ -1.31
CD44-202ENST00000278385 C11orf95C9JLR9 678 aaPredicted RBP6.89□□□□□ -1.31
CD44-202ENST00000278385 ADH1AP07327 375 aa6.89□□□□□ -1.31
CD44-202ENST00000278385 RELBQ01201 579 aa6.89□□□□□ -1.31
CD44-202ENST00000278385 ZNF787Q6DD87 383 aa6.89□□□□□ -1.31
CD44-202ENST00000278385 LINC00528Q8N1L1 170 aa6.89□□□□□ -1.31
CD44-202ENST00000278385 MEIOBQ8N635 442 aa6.89□□□□□ -1.31
CD44-202ENST00000278385 CCDC97Q96F63 343 aaPredicted RBP6.89□□□□□ -1.31
CD44-202ENST00000278385 NLRP3Q96P20 1036 aa6.89□□□□□ -1.31
CD44-202ENST00000278385 KLF16Q9BXK1 252 aaPredicted RBP6.89□□□□□ -1.31
CD44-202ENST00000278385 NOD1Q9Y239 953 aa6.89□□□□□ -1.31
CD44-202ENST00000278385 BMP1P13497 986 aa6.88□□□□□ -1.31
CD44-202ENST00000278385 PSME1Q06323 249 aa6.88□□□□□ -1.31
CD44-202ENST00000278385 CBLBQ13191 982 aa6.88□□□□□ -1.31
CD44-202ENST00000278385 ESCO1Q5FWF5 840 aa6.88□□□□□ -1.31
CD44-202ENST00000278385 Q6ZVU0 165 aa6.88□□□□□ -1.31
CD44-202ENST00000278385 TRIM50Q86XT4 487 aa6.88□□□□□ -1.31
CD44-202ENST00000278385 PURBQ96QR8 312 aaKnown RBP6.88□□□□□ -1.31
CD44-202ENST00000278385 MAN1A2O60476 641 aa6.87□□□□□ -1.31
CD44-202ENST00000278385 ERVK-9P63128 1117 aa6.87□□□□□ -1.31
CD44-202ENST00000278385 CCDC85AQ96PX6 553 aaPredicted RBP6.87□□□□□ -1.31
CD44-202ENST00000278385 POLMQ9NP87 494 aaPredicted RBP6.87□□□□□ -1.31
CD44-202ENST00000278385 CADPSQ9ULU8 1353 aa6.86□□□□□ -1.31
CD44-202ENST00000278385 MEN1O00255 615 aa6.86□□□□□ -1.31
CD44-202ENST00000278385 ATP9BO43861 1147 aa6.86□□□□□ -1.31
CD44-202ENST00000278385 GNRH1P01148 92 aa6.86□□□□□ -1.31
CD44-202ENST00000278385 PTGIRP43119 386 aa6.86□□□□□ -1.31
CD44-202ENST00000278385 ATP1A2P50993 1020 aa6.86□□□□□ -1.31
CD44-202ENST00000278385 PHTF2Q8N3S3 785 aa6.86□□□□□ -1.31
CD44-202ENST00000278385 ZFP42Q96MM3 310 aa6.86□□□□□ -1.31
CD44-202ENST00000278385 CUX2O14529 1486 aa6.85□□□□□ -1.31
CD44-202ENST00000278385 RSF1Q96T23 1441 aaPredicted RBP6.85□□□□□ -1.31
CD44-202ENST00000278385 PDS5BQ9NTI5 1447 aa6.85□□□□□ -1.31
CD44-202ENST00000278385 USP17L5A8MUK1 530 aa6.85□□□□□ -1.31
CD44-202ENST00000278385 AGBL1Q96MI9 1066 aa6.85□□□□□ -1.31
CD44-202ENST00000278385 GMPR2Q9P2T1 348 aaKnown RBP6.85□□□□□ -1.31
CD44-202ENST00000278385 SERPINA10Q9UK55 444 aa6.85□□□□□ -1.31
CD44-202ENST00000278385 NESP48681 1621 aa6.85□□□□□ -1.31
CD44-202ENST00000278385 TTLL8A6PVC2 850 aa6.84□□□□□ -1.31
CD44-202ENST00000278385 LILRA1O75019 489 aa6.84□□□□□ -1.31
CD44-202ENST00000278385 NCOA4Q13772 614 aa6.84□□□□□ -1.31
CD44-202ENST00000278385 SLC27A3Q5K4L6 730 aa6.84□□□□□ -1.31
CD44-202ENST00000278385 TRIM47Q96LD4 638 aa6.84□□□□□ -1.31
CD44-202ENST00000278385 ZNF395Q9H8N7 513 aaPredicted RBP6.84□□□□□ -1.31
CD44-202ENST00000278385 USP35Q9P2H5 1018 aa6.84□□□□□ -1.31
CD44-202ENST00000278385 TFIP11Q9UBB9 837 aaKnown RBP6.84□□□□□ -1.31
CD44-202ENST00000278385 USP17L3A6NCW0 530 aa6.83□□□□□ -1.32
CD44-202ENST00000278385 USP17L4A6NCW7 530 aa6.83□□□□□ -1.32
CD44-202ENST00000278385 PIK3CDO00329 1044 aa6.83□□□□□ -1.32
CD44-202ENST00000278385 SPINT1O43278 529 aa6.83□□□□□ -1.32
CD44-202ENST00000278385 ADD1P35611 737 aaKnown RBP6.83□□□□□ -1.32
CD44-202ENST00000278385 LARP1Q6PKG0 1096 aaKnown RBP6.83□□□□□ -1.32
CD44-202ENST00000278385 USP17L2Q6R6M4 530 aa6.83□□□□□ -1.32
CD44-202ENST00000278385 USP17L1Q7RTZ2 530 aa6.83□□□□□ -1.32
CD44-202ENST00000278385 TRIM46Q7Z4K8 759 aa6.83□□□□□ -1.32
CD44-202ENST00000278385 CDCA7Q9BWT1 371 aaPredicted RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 164.6 ms