RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 RBM42Q9BTD8 480 aaKnown RBP23.21■■□□□ 1.31
CPSF3-201ENST00000238112 FOXD4L1Q9NU39 408 aa23.21■■□□□ 1.31
CPSF3-201ENST00000238112 RGS12O14924 1447 aa23.2■■□□□ 1.31
CPSF3-201ENST00000238112 ATP10DQ9P241 1426 aa23.2■■□□□ 1.3
CPSF3-201ENST00000238112 MRE11P49959 708 aa23.2■■□□□ 1.3
CPSF3-201ENST00000238112 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.2■■□□□ 1.3
CPSF3-201ENST00000238112 PTMSP20962 102 aa23.19■■□□□ 1.3
CPSF3-201ENST00000238112 HSP90AB2PQ58FF8 381 aa23.19■■□□□ 1.3
CPSF3-201ENST00000238112 CEP85Q6P2H3 762 aa23.19■■□□□ 1.3
CPSF3-201ENST00000238112 PLEKHG3A1L390 1219 aa23.19■■□□□ 1.3
CPSF3-201ENST00000238112 NUTM2FA1L443 756 aa23.19■■□□□ 1.3
CPSF3-201ENST00000238112 MSH6P52701 1360 aa23.18■■□□□ 1.3
CPSF3-201ENST00000238112 ISY1Q9ULR0 285 aaKnown RBP23.17■■□□□ 1.3
CPSF3-201ENST00000238112 USP6P35125 1406 aa23.17■■□□□ 1.3
CPSF3-201ENST00000238112 C16orf71Q8IYS4 520 aaPredicted RBP23.17■■□□□ 1.3
CPSF3-201ENST00000238112 SKOR2Q2VWA4 1001 aaPredicted RBP23.16■■□□□ 1.3
CPSF3-201ENST00000238112 PANK2Q9BZ23 570 aa23.16■■□□□ 1.3
CPSF3-201ENST00000238112 RTL1A6NKG5 1358 aa23.16■■□□□ 1.3
CPSF3-201ENST00000238112 ADAMTS13Q76LX8 1427 aa23.16■■□□□ 1.3
CPSF3-201ENST00000238112 RABEP1Q15276 862 aa23.16■■□□□ 1.3
CPSF3-201ENST00000238112 SOX12O15370 315 aa23.15■■□□□ 1.3
CPSF3-201ENST00000238112 CASC1Q6TDU7 716 aa23.15■■□□□ 1.3
CPSF3-201ENST00000238112 GAS2L2Q8NHY3 880 aa23.15■■□□□ 1.3
CPSF3-201ENST00000238112 SLC4A2P04920 1241 aa23.14■■□□□ 1.3
CPSF3-201ENST00000238112 MEIS3Q99687 375 aa23.14■■□□□ 1.3
CPSF3-201ENST00000238112 TOPAZ1Q8N9V7 1692 aa23.14■■□□□ 1.29
CPSF3-201ENST00000238112 USP31Q70CQ4 1352 aa23.14■■□□□ 1.29
CPSF3-201ENST00000238112 GRPEL1Q9HAV7 217 aa23.14■■□□□ 1.29
CPSF3-201ENST00000238112 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.14■■□□□ 1.29
CPSF3-201ENST00000238112 CRB1P82279 1406 aa23.13■■□□□ 1.29
CPSF3-201ENST00000238112 APBB1O00213 710 aa23.13■■□□□ 1.29
CPSF3-201ENST00000238112 RTF1Q92541 710 aaKnown RBP23.13■■□□□ 1.29
CPSF3-201ENST00000238112 UBR1Q8IWV7 1749 aa23.13■■□□□ 1.29
CPSF3-201ENST00000238112 OTUD7AQ8TE49 926 aaPredicted RBP23.13■■□□□ 1.29
CPSF3-201ENST00000238112 RRAGDQ9NQL2 400 aaPredicted RBP23.13■■□□□ 1.29
CPSF3-201ENST00000238112 PEAK1Q9H792 1746 aa23.12■■□□□ 1.29
CPSF3-201ENST00000238112 ARHGEF10O15013 1369 aa23.12■■□□□ 1.29
CPSF3-201ENST00000238112 HMMRO75330 724 aa23.11■■□□□ 1.29
CPSF3-201ENST00000238112 USP26Q9BXU7 913 aa23.11■■□□□ 1.29
CPSF3-201ENST00000238112 RGPD1P0DJD0 1748 aa23.11■■□□□ 1.29
CPSF3-201ENST00000238112 GOLGA6L22H0YM25 854 aa23.11■■□□□ 1.29
CPSF3-201ENST00000238112 SMARCA5O60264 1052 aaPredicted RBP23.11■■□□□ 1.29
CPSF3-201ENST00000238112 SDSP20132 328 aa23.11■■□□□ 1.29
CPSF3-201ENST00000238112 TSPYL4Q9UJ04 414 aa23.11■■□□□ 1.29
CPSF3-201ENST00000238112 NALCNQ8IZF0 1738 aa23.11■■□□□ 1.29
CPSF3-201ENST00000238112 PLEKHG1Q9ULL1 1385 aa23.11■■□□□ 1.29
CPSF3-201ENST00000238112 MIS18AQ9NYP9 233 aa23.1■■□□□ 1.29
CPSF3-201ENST00000238112 MAP3K19Q56UN5 1328 aa23.1■■□□□ 1.29
CPSF3-201ENST00000238112 SSFA2P28290 1259 aa23.09■■□□□ 1.29
CPSF3-201ENST00000238112 MTHFSDQ2M296 383 aaKnown RBP23.08■■□□□ 1.29
CPSF3-201ENST00000238112 SLC4A10Q6U841 1118 aa23.08■■□□□ 1.29
CPSF3-201ENST00000238112 TTC21AQ8NDW8 1320 aa23.08■■□□□ 1.29
CPSF3-201ENST00000238112 LTKP29376 864 aa23.08■■□□□ 1.28
CPSF3-201ENST00000238112 CCT4P50991 539 aaKnown RBP23.08■■□□□ 1.28
CPSF3-201ENST00000238112 FOXO3O43524 673 aa23.07■■□□□ 1.28
CPSF3-201ENST00000238112 FLT4P35916 1363 aa23.07■■□□□ 1.28
CPSF3-201ENST00000238112 SSH2Q76I76 1423 aa23.06■■□□□ 1.28
CPSF3-201ENST00000238112 REC8O95072 547 aa23.06■■□□□ 1.28
CPSF3-201ENST00000238112 SBNO1A3KN83 1393 aa23.06■■□□□ 1.28
CPSF3-201ENST00000238112 CLEC17AQ6ZS10 378 aa23.05■■□□□ 1.28
CPSF3-201ENST00000238112 SLC26A8Q96RN1 970 aa23.05■■□□□ 1.28
CPSF3-201ENST00000238112 F6X3S4 739 aa23.04■■□□□ 1.28
CPSF3-201ENST00000238112 G2E3Q7L622 706 aa23.04■■□□□ 1.28
CPSF3-201ENST00000238112 ST18O60284 1047 aa23.04■■□□□ 1.28
CPSF3-201ENST00000238112 AMPHP49418 695 aa23.04■■□□□ 1.28
CPSF3-201ENST00000238112 STK31Q9BXU1 1019 aa23.04■■□□□ 1.28
CPSF3-201ENST00000238112 NUCB2P80303 420 aa23.03■■□□□ 1.28
CPSF3-201ENST00000238112 EID1Q9Y6B2 187 aa23.03■■□□□ 1.28
CPSF3-201ENST00000238112 BAG4O95429 457 aaKnown RBP23.03■■□□□ 1.28
CPSF3-201ENST00000238112 NGDNQ8NEJ9 315 aaKnown RBP23.03■■□□□ 1.28
CPSF3-201ENST00000238112 KDRP35968 1356 aa23.03■■□□□ 1.28
CPSF3-201ENST00000238112 PTPRUQ92729 1446 aa23.02■■□□□ 1.28
CPSF3-201ENST00000238112 GNAI2P04899 355 aa23.02■■□□□ 1.28
CPSF3-201ENST00000238112 ERC2O15083 957 aa23.01■■□□□ 1.27
CPSF3-201ENST00000238112 GAS2L3Q86XJ1 694 aa23.01■■□□□ 1.27
CPSF3-201ENST00000238112 EYA1Q99502 592 aa23■■□□□ 1.27
CPSF3-201ENST00000238112 OSBPL3Q9H4L5 887 aa23■■□□□ 1.27
CPSF3-201ENST00000238112 AMOTL2Q9Y2J4 779 aa23■■□□□ 1.27
CPSF3-201ENST00000238112 IGSF1Q8N6C5 1336 aa23■■□□□ 1.27
CPSF3-201ENST00000238112 FMN2Q9NZ56 1722 aa23■■□□□ 1.27
CPSF3-201ENST00000238112 PDE1AP54750 535 aa22.99■■□□□ 1.27
CPSF3-201ENST00000238112 CWC22Q9HCG8 908 aaKnown RBP22.99■■□□□ 1.27
CPSF3-201ENST00000238112 DDX49Q9Y6V7 483 aaKnown RBP22.99■■□□□ 1.27
CPSF3-201ENST00000238112 KLHL40Q2TBA0 621 aa22.99■■□□□ 1.27
CPSF3-201ENST00000238112 RIMS1Q86UR5 1692 aaKnown RBP22.99■■□□□ 1.27
CPSF3-201ENST00000238112 HTATSF1O43719 755 aaKnown RBP22.97■■□□□ 1.27
CPSF3-201ENST00000238112 CLCN1P35523 988 aa22.97■■□□□ 1.27
CPSF3-201ENST00000238112 CCDC30Q5VVM6 783 aa22.97■■□□□ 1.27
CPSF3-201ENST00000238112 EXOC6BQ9Y2D4 811 aa22.97■■□□□ 1.27
CPSF3-201ENST00000238112 CEP170BQ9Y4F5 1589 aaPredicted RBP22.96■■□□□ 1.27
CPSF3-201ENST00000238112 GNAI3P08754 354 aa22.96■■□□□ 1.27
CPSF3-201ENST00000238112 FLIIQ13045 1269 aa22.96■■□□□ 1.27
CPSF3-201ENST00000238112 FKBP5Q13451 457 aaPredicted RBP22.96■■□□□ 1.27
CPSF3-201ENST00000238112 MCTP1Q6DN14 999 aa22.96■■□□□ 1.27
CPSF3-201ENST00000238112 TRIM44Q96DX7 344 aaPredicted RBP22.96■■□□□ 1.27
CPSF3-201ENST00000238112 LRRCC1Q9C099 1032 aa22.95■■□□□ 1.26
CPSF3-201ENST00000238112 GNAT3A8MTJ3 354 aa22.94■■□□□ 1.26
CPSF3-201ENST00000238112 CYP2E1P05181 493 aaPredicted RBP22.94■■□□□ 1.26
CPSF3-201ENST00000238112 KIF13AQ9H1H9 1805 aa22.94■■□□□ 1.26
CPSF3-201ENST00000238112 IBTKQ9P2D0 1353 aaPredicted RBP22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms