RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 HIF1AQ16665 826 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 OGFOD3Q6PK18 319 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 CRTC1Q6UUV9 634 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 KDELC1Q6UW63 502 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 Q6ZVL8 140 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 ZNF765Q7L2R6 523 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 HSD11B1LQ7Z5J1 315 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 TECPR1Q7Z6L1 1165 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 ARRDC2Q8TBH0 407 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 IMP4Q96G21 291 aaKnown RBP12.57□□□□□ -0.4
PNKP-217ENST00000625216 PDXPQ96GD0 296 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 TDRD1Q9BXT4 1180 aaKnown RBP12.57□□□□□ -0.4
PNKP-217ENST00000625216 SLC25A51Q9H1U9 297 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 FGF22Q9HCT0 170 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 NINJ2Q9NZG7 142 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 UBP1Q9NZI7 540 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 GULP1Q9UBP9 304 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 GPR34Q9UPC5 381 aa12.57□□□□□ -0.4
PNKP-217ENST00000625216 DSPP15924 2871 aaKnown RBP12.56□□□□□ -0.4
PNKP-217ENST00000625216 MAP2K7O14733 419 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 USP12O75317 370 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 CSO75390 466 aaKnown RBP12.56□□□□□ -0.4
PNKP-217ENST00000625216 SUN1O94901 812 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 CELA2BP08218 269 aaPredicted RBP12.56□□□□□ -0.4
PNKP-217ENST00000625216 CTPS1P17812 591 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 LSSP48449 732 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 LMAN1P49257 510 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 GEMP55040 296 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 SKOR1P84550 965 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 CDK16Q00536 496 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 PTSQ03393 145 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 PDIA2Q13087 525 aaKnown RBP12.56□□□□□ -0.4
PNKP-217ENST00000625216 CBLBQ13191 982 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 PEX6Q13608 980 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 PRPSAP1Q14558 356 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 SLMAPQ14BN4 828 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 ISXQ2M1V0 245 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 BBS9Q3SYG4 887 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 DENND2CQ68D51 928 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 PPP1R21Q6ZMI0 780 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 RBM44Q6ZP01 1051 aaKnown RBP12.56□□□□□ -0.4
PNKP-217ENST00000625216 CENPUQ71F23 418 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 TAF8Q7Z7C8 310 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 HEATR4Q86WZ0 1026 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 RELL1Q8IUW5 271 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 NRSN1Q8IZ57 195 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 GPR156Q8NFN8 814 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 FGF11Q92914 225 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 TADA1Q96BN2 335 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 C9orf72Q96LT7 481 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 LYSMD1Q96S90 227 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 LGR4Q9BXB1 951 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 CYP4F12Q9HCS2 524 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 TRNAU1APQ9NX07 287 aaKnown RBP12.56□□□□□ -0.4
PNKP-217ENST00000625216 LHX6Q9UPM6 363 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 CHKBQ9Y259 395 aa12.56□□□□□ -0.4
PNKP-217ENST00000625216 URB1O60287 2271 aaKnown RBP12.55□□□□□ -0.4
PNKP-217ENST00000625216 FAM208BQ5VWN6 2430 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 PRSS38A1L453 326 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 RGSL1A5PLK6 1076 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 CAPN8A6NHC0 703 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 ERI2A8K979 691 aaKnown RBP12.55□□□□□ -0.4
PNKP-217ENST00000625216 EIF3HO15372 352 aaKnown RBP eCLIP12.55□□□□□ -0.4
PNKP-217ENST00000625216 RRP8O43159 456 aaKnown RBP12.55□□□□□ -0.4
PNKP-217ENST00000625216 AVILO75366 819 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 ANXA9O76027 345 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 DXOO77932 396 aaKnown RBP12.55□□□□□ -0.4
PNKP-217ENST00000625216 PRLP01236 227 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 CEACAM5P06731 702 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 PNLIPP16233 465 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 CD86P42081 329 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 MAGEA4P43358 317 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 GPR1P46091 355 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 CDK3Q00526 305 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 HP1BP3Q5SSJ5 553 aaPredicted RBP12.55□□□□□ -0.4
PNKP-217ENST00000625216 PERM1Q5SV97 790 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 LRRC66Q68CR7 880 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 RAET1GQ6H3X3 334 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 LRRC8BQ6P9F7 803 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 ADAMTSL4Q6UY14 1074 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 HDXQ7Z353 690 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 TSPAN33Q86UF1 283 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 ANKMY2Q8IV38 441 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 IGDCC3Q8IVU1 814 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 PELI3Q8N2H9 469 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 MPP5Q8N3R9 675 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 FAM46DQ8NEK8 389 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 OR52K1Q8NGK4 314 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 SNIP1Q8TAD8 396 aaKnown RBP12.55□□□□□ -0.4
PNKP-217ENST00000625216 UBLCP1Q8WVY7 318 aaPredicted RBP12.55□□□□□ -0.4
PNKP-217ENST00000625216 AP2M1Q96CW1 435 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 MRGPRX2Q96LB1 330 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 ZNF578Q96N58 590 aaPredicted RBP12.55□□□□□ -0.4
PNKP-217ENST00000625216 APOL2Q9BQE5 337 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 CCDC3Q9BQI4 270 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 FICDQ9BVA6 458 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 ADGRE3Q9BY15 652 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 FRMD8Q9BZ67 464 aaPredicted RBP12.55□□□□□ -0.4
PNKP-217ENST00000625216 TSPYL1Q9H0U9 437 aa12.55□□□□□ -0.4
PNKP-217ENST00000625216 TMEM168Q9H0V1 697 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms