RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 OAS3Q9Y6K5 1087 aaKnown RBP10.53□□□□□ -0.72
CUX1-221ENST00000622516 PRSS21Q9Y6M0 314 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 SLC30A1Q9Y6M5 507 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 MYO9BQ13459 2157 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 TRIM24O15164 1050 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 FZD6O60353 706 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 RFPL2O75678 378 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 PGLSO95336 258 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 CXCL14O95715 111 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 LRG1P02750 347 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 PYGLP06737 847 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 C8AP07357 584 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 HGFP14210 728 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 CES1P23141 567 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 ME2P23368 584 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 HNF1BP35680 557 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 IL2P60568 153 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 NFKB2Q00653 900 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 KLC1Q07866 573 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 RBBP7Q16576 425 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 PLA2G4EQ3MJ16 856 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 INO80DQ53TQ3 878 aaPredicted RBP10.53□□□□□ -0.72
CUX1-221ENST00000622516 RFLNAQ6ZTI6 216 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 SPRED2Q7Z698 418 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 SPATA24Q86W54 205 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 FIBCD1Q8N539 461 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 OR52B6Q8NGF0 335 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 LKAAEAR1Q8TD35 194 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 TCEAL4Q96EI5 215 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 FAR2Q96K12 515 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 CEP295NLQ96MC4 621 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 KLHL32Q96NJ5 620 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 SERPINI1Q99574 410 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 HGH1Q9BTY7 390 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 C1orf50Q9BV19 199 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 ASB8Q9H765 288 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 ABCB8Q9NUT2 735 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 DLGAP2Q9P1A6 1054 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 LRCH1Q9Y2L9 728 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 SLC4A7Q9Y6M7 1214 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 DPPA5A6NC42 116 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 KATNA1O75449 491 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 ZNF821O75541 412 aaPredicted RBP10.53□□□□□ -0.72
CUX1-221ENST00000622516 SNRPB2P08579 225 aaKnown RBP10.53□□□□□ -0.72
CUX1-221ENST00000622516 LAG3P18627 525 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 HMGCLP35914 325 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 BCL2L1Q07817 233 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 SQLEQ14534 574 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 PABPC1LQ4VXU2 614 aaKnown RBP10.53□□□□□ -0.72
CUX1-221ENST00000622516 ANKS6Q68DC2 871 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 AAGABQ6PD74 315 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 SYVN1Q86TM6 617 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 RETREG3Q86VR2 466 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 SERPINA9Q86WD7 417 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 PLEKHG4BQ96PX9 1271 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 TRMOQ9BU70 441 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 C2orf49Q9BVC5 232 aaPredicted RBP10.53□□□□□ -0.72
CUX1-221ENST00000622516 ZFYVE1Q9HBF4 777 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 POLG2Q9UHN1 485 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 RIMKLBQ9ULI2 386 aa10.53□□□□□ -0.72
CUX1-221ENST00000622516 CORO1CQ9ULV4 474 aaPredicted RBP10.53□□□□□ -0.72
CUX1-221ENST00000622516 CEP290O15078 2479 aa10.52□□□□□ -0.72
CUX1-221ENST00000622516 ABHD14A-ACY1A0A1B0GW23 586 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 EME2A4GXA9 379 aaPredicted RBP10.52□□□□□ -0.73
CUX1-221ENST00000622516 PRORSD1PA6NEY8 169 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 CAPN8A6NHC0 703 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 HIDE1A8MVS5 230 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 SNX2O60749 519 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 INHBCP55103 352 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 GALNT1Q10472 559 aaPredicted RBP10.52□□□□□ -0.73
CUX1-221ENST00000622516 LRP8Q14114 963 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 PTRHD1Q6GMV3 140 aaKnown RBP10.52□□□□□ -0.73
CUX1-221ENST00000622516 RETSATQ6NUM9 610 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 GPSM1Q86YR5 675 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 CDYL2Q8N8U2 506 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 DCAF4L2Q8NA75 395 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 TEX37Q96LM6 180 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 TCF12Q99081 682 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 IL26Q9NPH9 171 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 SLCO3A1Q9UIG8 710 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 LSM7Q9UK45 103 aaKnown RBP10.52□□□□□ -0.73
CUX1-221ENST00000622516 PRPF19Q9UMS4 504 aaKnown RBP10.52□□□□□ -0.73
CUX1-221ENST00000622516 A0A0J9YYE9 177 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 LEFTY2O00292 366 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 MRASO14807 208 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 NRP2O60462 931 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 PARNO95453 639 aaKnown RBP10.52□□□□□ -0.73
CUX1-221ENST00000622516 HLA-FP30511 346 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 GDF5P43026 501 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 PPP3CCP48454 512 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 CLCN7P51798 805 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 ERVFC1P60507 584 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 LCP2Q13094 533 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 CAPRIN1Q14444 709 aaKnown RBP10.52□□□□□ -0.73
CUX1-221ENST00000622516 ARMC3Q5W041 872 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 ITIH5Q86UX2 942 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 TMEM25Q86YD3 366 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 ANKRD27Q96NW4 1050 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 APOL5Q9BWW9 433 aa10.52□□□□□ -0.73
CUX1-221ENST00000622516 POPDC3Q9HBV1 291 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms