RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 WDR83Q9BRX9 315 aaKnown RBP13.34□□□□□ -0.27
LINC00540-202ENST00000616974 ASB8Q9H765 288 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 GULP1Q9UBP9 304 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 FAM8A1Q9UBU6 413 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 ASIC3Q9UHC3 531 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 DNAJC16Q9Y2G8 782 aa13.34□□□□□ -0.27
LINC00540-202ENST00000616974 PRAMEF33A0A0G2JMD5 474 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 LMO7DNF2Z398 122 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 RAD51CO43502 376 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 SGTAO43765 313 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 TNFP01375 233 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 CTSEP14091 401 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 CSRP1P21291 193 aaKnown RBP13.33□□□□□ -0.28
LINC00540-202ENST00000616974 ARNTP27540 789 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 TEAD1P28347 426 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 PTK6Q13882 451 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 PERM1Q5SV97 790 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 GUSBP11Q6P575 273 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 OXR1Q8N573 874 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 CLDN19Q8N6F1 224 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 LRRN4CLQ8ND94 238 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 FAM174AQ8TBP5 190 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 ZNF398Q8TD17 642 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 HDAC10Q969S8 669 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 EIF2B3Q9NR50 452 aaKnown RBP13.33□□□□□ -0.28
LINC00540-202ENST00000616974 NLE1Q9NVX2 485 aaPredicted RBP13.33□□□□□ -0.28
LINC00540-202ENST00000616974 MARCH4Q9P2E8 410 aaPredicted RBP13.33□□□□□ -0.28
LINC00540-202ENST00000616974 TCAF1Q9Y4C2 921 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 ZFYVE26Q68DK2 2539 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 PKD1L2Q7Z442 2459 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.33□□□□□ -0.28
LINC00540-202ENST00000616974 RGSL1A5PLK6 1076 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 ERI2A8K979 691 aaKnown RBP13.33□□□□□ -0.28
LINC00540-202ENST00000616974 B4DGG1 531 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 NUAK1O60285 661 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 OR1I1O60431 355 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 DFNA5O60443 496 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 URI1O94763 535 aaPredicted RBP13.33□□□□□ -0.28
LINC00540-202ENST00000616974 CRTAMO95727 393 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 CEACAM1P13688 526 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 TPSB2P20231 275 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 MAGEA6P43360 314 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 DR1Q01658 176 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 TPSAB1Q15661 275 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 FNBP1LQ5T0N5 605 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 NAPRTQ6XQN6 538 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 TAF8Q7Z7C8 310 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 LINC00523Q86TU6 105 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 IGDCC3Q8IVU1 814 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 TRIM44Q96DX7 344 aaPredicted RBP13.33□□□□□ -0.28
LINC00540-202ENST00000616974 FCRL3Q96P31 734 aaPredicted RBP13.33□□□□□ -0.28
LINC00540-202ENST00000616974 SCHIP1Q9P0W5 487 aaPredicted RBP13.33□□□□□ -0.28
LINC00540-202ENST00000616974 SPASTQ9UBP0 616 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 PRSS21Q9Y6M0 314 aa13.33□□□□□ -0.28
LINC00540-202ENST00000616974 FAM149AA5PLN7 773 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 H3BM21 787 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 TNFRSF10CO14798 259 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 NOBOXO60393 691 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 GOT2P00505 430 aaKnown RBP13.32□□□□□ -0.28
LINC00540-202ENST00000616974 MAZP56270 477 aaKnown RBP13.32□□□□□ -0.28
LINC00540-202ENST00000616974 TMEM115Q12893 351 aaPredicted RBP13.32□□□□□ -0.28
LINC00540-202ENST00000616974 SUZ12Q15022 739 aaKnown RBP13.32□□□□□ -0.28
LINC00540-202ENST00000616974 SEPT7Q16181 437 aaKnown RBP13.32□□□□□ -0.28
LINC00540-202ENST00000616974 ZRANB3Q5FWF4 1079 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 TSTD2Q5T7W7 516 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 LRRC8BQ6P9F7 803 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 DHRS13Q6UX07 377 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 ZNF761Q86XN6 746 aaPredicted RBP13.32□□□□□ -0.28
LINC00540-202ENST00000616974 PHYKPLQ8IUZ5 450 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 NAGSQ8N159 534 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 CHCHD4Q8N4Q1 142 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 FAM46DQ8NEK8 389 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 GPBAR1Q8TDU6 330 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 PLAC1Q9HBJ0 212 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 NLGN3Q9NZ94 848 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 FTSJ1Q9UET6 329 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 TBC1D29Q9UFV1 150 aa13.32□□□□□ -0.28
LINC00540-202ENST00000616974 AGAP14A8MT82 685 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 TOR1BO14657 336 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 CDK14O94921 469 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 LDOC1O95751 146 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-202ENST00000616974 IVLP07476 585 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 RPL10P27635 214 aaKnown RBP13.31□□□□□ -0.28
LINC00540-202ENST00000616974 FOXN2P32314 431 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 ACTR1BP42025 376 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 RPL21P46778 160 aaKnown RBP13.31□□□□□ -0.28
LINC00540-202ENST00000616974 ACADVLP49748 655 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 DRG2P55039 364 aaKnown RBP13.31□□□□□ -0.28
LINC00540-202ENST00000616974 ACTR1AP61163 376 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 IZUMO3Q5VZ72 239 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 FAM83HQ6ZRV2 1179 aaPredicted RBP13.31□□□□□ -0.28
LINC00540-202ENST00000616974 SLCO2A1Q92959 643 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 VPS35Q96QK1 796 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 OR2M4Q96R27 311 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 NRTNQ99748 197 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 DPEP2Q9H4A9 486 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 TRIM39Q9HCM9 518 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 PRDM8Q9NQV8 689 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 TREX1Q9NSU2 369 aa13.31□□□□□ -0.28
LINC00540-202ENST00000616974 TAAR2Q9P1P5 351 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms