RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ABCD2Q9UBJ2 740 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 ZNF225Q9UK10 706 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 TMCO1Q9UM00 188 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 TIMM22Q9Y584 194 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 OR51B4Q9Y5P0 310 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 GPR45Q9Y5Y3 372 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 A0A0U1RQS6 177 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 NCF1BA6NI72 391 aaPredicted RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 NCF1CA8MVU1 366 aaPredicted RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 H0Y626 953 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 ANGPT2O15123 496 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 AHCYL1O43865 530 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 TBL1XO60907 577 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 CRCPO75575 148 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 ESR1P03372 595 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 UROSP10746 265 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 HSPA8P11142 646 aaKnown RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 NCF1P14598 390 aaPredicted RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 ZNF16P17020 682 aaPredicted RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 ZNF26P17031 533 aaPredicted RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 CHRM3P20309 590 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 GRIA2P42262 883 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 PPP3CCP48454 512 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 MRPL19P49406 292 aaKnown RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 ECT2LQ008S8 904 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 GRIK2Q13002 908 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 PABPC1LQ4VXU2 614 aaKnown RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 COQ5Q5HYK3 327 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 IRAK1BP1Q5VVH5 260 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 EGFLAMQ63HQ2 1017 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 PRMT9Q6P2P2 845 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 BLOC1S3Q6QNY0 202 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 CYP2R1Q6VVX0 501 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.99□□□□□ -0.81
VPS53-220ENST00000576149 EFL1Q7Z2Z2 1120 aaKnown RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 SPATA19Q7Z5L4 167 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 DHFR2Q86XF0 187 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 CARNMT1Q8N4J0 409 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 UHRF1Q96T88 793 aaPredicted RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 CENPKQ9BS16 269 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 HGH1Q9BTY7 390 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 SMPD4Q9NXE4 827 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 IL17CQ9P0M4 197 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 FNDC3AQ9Y2H6 1198 aaKnown RBP9.99□□□□□ -0.81
VPS53-220ENST00000576149 GBF1Q92538 1859 aa9.99□□□□□ -0.81
VPS53-220ENST00000576149 ENO4A6NNW6 628 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 H0YJX3 145 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 FXYD1O00168 92 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 NME4O00746 187 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 PQBP1O60828 265 aaKnown RBP9.98□□□□□ -0.81
VPS53-220ENST00000576149 LATS1O95835 1130 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 SOD2P04179 222 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 HMGCLP35914 325 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 DIO3P55073 304 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 CCL23P55773 120 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 RHOAP61586 193 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 SMAD3P84022 425 aaKnown RBP9.98□□□□□ -0.81
VPS53-220ENST00000576149 TWF1Q12792 350 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 RPS6KA2Q15349 733 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 MAP7D1Q3KQU3 841 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 XKR7Q5GH72 579 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 PITRM1Q5JRX3 1037 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 UGT3A1Q6NUS8 523 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 TMEM150AQ86TG1 271 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 GPSM1Q86YR5 675 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 CPNE9Q8IYJ1 553 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 STK40Q8N2I9 435 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 GALNT4Q8N4A0 578 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 OR56A4Q8NGH8 313 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 TSPEARQ8WU66 669 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 LRTOMTQ8WZ04 291 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 PBXIP1Q96AQ6 731 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 EID2BQ96D98 161 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 P2RY12Q9H244 342 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 DNMT3BQ9UBC3 853 aaKnown RBP9.98□□□□□ -0.81
VPS53-220ENST00000576149 PKP3Q9Y446 797 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 ZNF711Q9Y462 761 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 PCDHB9Q9Y5E1 797 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 E5RI56 91 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 GFRA2O00451 464 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 E2F3O00716 465 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 SNX2O60749 519 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 PRAMEF12O95522 483 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 CHEK2O96017 543 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 CYBBP04839 570 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 MBL2P11226 248 aaPredicted RBP9.98□□□□□ -0.81
VPS53-220ENST00000576149 CLCN2P51788 898 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 CLCN7P51798 805 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 CDKL1Q00532 357 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 CACNG1Q06432 222 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 VEPH1Q14D04 833 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 TGFBIQ15582 683 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 TAS2R42Q7RTR8 314 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 DNAJB7Q7Z6W7 309 aaPredicted RBP9.98□□□□□ -0.81
VPS53-220ENST00000576149 SLC15A3Q8IY34 581 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 HJURPQ8NCD3 748 aaPredicted RBP9.98□□□□□ -0.81
VPS53-220ENST00000576149 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.98□□□□□ -0.81
VPS53-220ENST00000576149 ZUFSPQ96AP4 578 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 EME1Q96AY2 570 aa9.98□□□□□ -0.81
VPS53-220ENST00000576149 ALG14Q96F25 216 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms