RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ZNF569Q5MCW4 686 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 ZNF648Q5T619 568 aaPredicted RBP20.79■□□□□ 0.92
VPS53-216ENST00000574029 GPR26Q8NDV2 337 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 C9orf43Q8TAL5 461 aaPredicted RBP20.79■□□□□ 0.92
VPS53-216ENST00000574029 STARD8Q92502 1023 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 C9orf72Q96LT7 481 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 RNF157Q96PX1 679 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 ZSCAN5AQ9BUG6 496 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 SPATA16Q9BXB7 569 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 OR2AG1Q9H205 316 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 ARFGAP3Q9NP61 516 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 KLC4Q9NSK0 619 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 SCHIP1Q9P0W5 487 aaPredicted RBP20.79■□□□□ 0.92
VPS53-216ENST00000574029 CTTNBP2NLQ9P2B4 639 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 UVRAGQ9P2Y5 699 aa20.79■□□□□ 0.92
VPS53-216ENST00000574029 NFKBIL1Q9UBC1 381 aaPredicted RBP20.79■□□□□ 0.92
VPS53-216ENST00000574029 SLC25A14O95258 325 aaPredicted RBP20.78■□□□□ 0.92
VPS53-216ENST00000574029 KDELR1P24390 212 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 CASRP41180 1078 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 STAT5AP42229 794 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 GFERP55789 205 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 MC1RQ01726 317 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 TMEM26Q6ZUK4 368 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 KDELC2Q7Z4H8 507 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 TMC3Q7Z5M5 1100 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 ADGRG6Q86SQ4 1221 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 TRAM1L1Q8N609 369 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 ESX1Q8N693 406 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 APOBEC4Q8WW27 367 aaKnown RBP20.78■□□□□ 0.92
VPS53-216ENST00000574029 RAPGEF5Q92565 580 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 ZNF830Q96NB3 372 aaPredicted RBP20.78■□□□□ 0.92
VPS53-216ENST00000574029 ZNF624Q9P2J8 865 aaPredicted RBP20.78■□□□□ 0.92
VPS53-216ENST00000574029 SLC23A2Q9UGH3 650 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 LCMT1Q9UIC8 334 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 ANAPC2Q9UJX6 822 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 LUC7L2Q9Y383 392 aaKnown RBP20.78■□□□□ 0.92
VPS53-216ENST00000574029 SPTA1P02549 2419 aa20.78■□□□□ 0.92
VPS53-216ENST00000574029 HECTD1Q9ULT8 2610 aa20.77■□□□□ 0.92
VPS53-216ENST00000574029 PRR19A6NJB7 356 aa20.77■□□□□ 0.92
VPS53-216ENST00000574029 TOX3O15405 576 aaPredicted RBP20.77■□□□□ 0.92
VPS53-216ENST00000574029 UBASH3AP57075 661 aa20.77■□□□□ 0.92
VPS53-216ENST00000574029 SRSF1Q07955 248 aaKnown RBP eCLIP20.77■□□□□ 0.927e-9■■□□□ 13.7
VPS53-216ENST00000574029 ALS2CLQ60I27 953 aa20.77■□□□□ 0.92
VPS53-216ENST00000574029 PDPK2PQ6A1A2 396 aa20.77■□□□□ 0.92
VPS53-216ENST00000574029 PLD5Q8N7P1 536 aa20.77■□□□□ 0.92
VPS53-216ENST00000574029 GLYATL1Q969I3 302 aa20.77■□□□□ 0.92
VPS53-216ENST00000574029 IMP4Q96G21 291 aaKnown RBP20.77■□□□□ 0.92
VPS53-216ENST00000574029 OSGEPL1Q9H4B0 414 aa20.77■□□□□ 0.92
VPS53-216ENST00000574029 MAGEE1Q9HCI5 957 aa20.77■□□□□ 0.92
VPS53-216ENST00000574029 RAD18Q9NS91 495 aa20.77■□□□□ 0.92
VPS53-216ENST00000574029 SLC30A1Q9Y6M5 507 aa20.77■□□□□ 0.92
VPS53-216ENST00000574029 MTA2O94776 668 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 UBXN7O94888 489 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 VIPP01282 170 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 GYPCP04921 128 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 H2AFZP0C0S5 128 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 TCN2P20062 427 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 SLC19A1P41440 591 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 TPM4P67936 248 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 FOXK1P85037 733 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 DEFB109BQ30KR1 87 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 CRTC3Q6UUV7 619 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 H2AFVQ71UI9 128 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 TADA1Q96BN2 335 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 ABHD17AQ96GS6 310 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 CBX8Q9HC52 389 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 ZNF71Q9NQZ8 489 aaPredicted RBP20.76■□□□□ 0.91
VPS53-216ENST00000574029 SHOC2Q9UQ13 582 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 ZNF711Q9Y462 761 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 RPS6KL1Q9Y6S9 549 aa20.76■□□□□ 0.91
VPS53-216ENST00000574029 ZNF487B1APH4 448 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 KMOO15229 486 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 PIRTP0C851 137 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 ZNF28P17035 718 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 ZNF7P17097 686 aaPredicted RBP20.75■□□□□ 0.91
VPS53-216ENST00000574029 TYRP1P17643 537 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 F8A1P23610 371 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 NOP2P46087 812 aaKnown RBP20.75■□□□□ 0.91
VPS53-216ENST00000574029 FOXM1Q08050 763 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 INSCQ1MX18 579 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 PLA2G4EQ3MJ16 856 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 FAM182AQ5T1J6 154 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 ZFYVE27Q5T4F4 411 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 SLC9A4Q6AI14 798 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 C16orf46Q6P387 395 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 ABRAXAS1Q6UWZ7 409 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 NT5DC3Q86UY8 548 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 LUZP1Q86V48 1076 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 LRRTM4Q86VH4 590 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 CTNNBL1Q8WYA6 563 aaPredicted RBP20.75■□□□□ 0.91
VPS53-216ENST00000574029 TIMM29Q9BSF4 260 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 PACSIN1Q9BY11 444 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 ULBP3Q9BZM4 244 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 BRD8Q9H0E9 1235 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 ZNF768Q9H5H4 540 aaKnown RBP20.75■□□□□ 0.91
VPS53-216ENST00000574029 HEY1Q9Y5J3 304 aa20.75■□□□□ 0.91
VPS53-216ENST00000574029 MRPS18BQ9Y676 258 aaKnown RBP20.75■□□□□ 0.91
VPS53-216ENST00000574029 VEGFDO43915 354 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 AMD1P17707 334 aa20.74■□□□□ 0.91
VPS53-216ENST00000574029 HNRNPH3P31942 346 aaKnown RBP20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms