RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 KLC4Q9NSK0 619 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 HACD3Q9P035 362 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 CACNA1GO43497 2377 aa20.49■□□□□ 0.87
CLN3-219ENST00000565778 KIF26BQ2KJY2 2108 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 TEX51A0A1B0GUA7 166 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 GPR89AB7ZAQ6 455 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 PJA2O43164 708 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 MTX2O75431 263 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 CDK14O94921 469 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 GPR89BP0CG08 455 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 MPSTP25325 297 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 LIMK2P53671 638 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 EIF3EP60228 445 aaKnown RBP20.48■□□□□ 0.87
CLN3-219ENST00000565778 GPLD1P80108 840 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 NFATC2Q13469 925 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 SQSTM1Q13501 440 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 DARS2Q6PI48 645 aaKnown RBP20.48■□□□□ 0.87
CLN3-219ENST00000565778 CRTC3Q6UUV7 619 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 SLC9B2Q86UD5 537 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 OR4D9Q8NGE8 314 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 OR10G6Q8NH81 332 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 USP7Q93009 1102 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 SH3KBP1Q96B97 665 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 DPYSL5Q9BPU6 564 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 HERPUD2Q9BSE4 406 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 OSGEPL1Q9H4B0 414 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 PRDM8Q9NQV8 689 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 AMFRQ9UKV5 643 aa20.48■□□□□ 0.87
CLN3-219ENST00000565778 OR5K4A6NMS3 321 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 KMOO15229 486 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 VEGFDO43915 354 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 ANXA9O76027 345 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 TJP3O95049 919 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 AGTP01019 485 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 PTMAP06454 111 aaKnown RBP20.47■□□□□ 0.87
CLN3-219ENST00000565778 RBP3P10745 1247 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 PYGMP11217 842 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 F3P13726 295 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 HLA-DPA1P20036 260 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 ETV5P41161 510 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 GEMP55040 296 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 VAC14Q08AM6 782 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 KIF5AQ12840 1032 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 CLN3Q13286 438 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 INSCQ1MX18 579 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 ATP13A5Q4VNC0 1218 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.47■□□□□ 0.87
CLN3-219ENST00000565778 TMEM164Q5U3C3 297 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 ZDHHC20Q5W0Z9 365 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 ITPRIPL1Q6GPH6 555 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 AADACL2Q6P093 401 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 GLT6D1Q7Z4J2 308 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 LRRTM4Q86VH4 590 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 CDKL3Q8IVW4 592 aaPredicted RBP20.47■□□□□ 0.87
CLN3-219ENST00000565778 TTC30BQ8N4P2 665 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 SPC24Q8NBT2 197 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 CCDC74BQ96LY2 380 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 TTC25Q96NG3 672 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 FAM118BQ9BPY3 351 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 SARS2Q9NP81 518 aaKnown RBP20.47■□□□□ 0.87
CLN3-219ENST00000565778 IL26Q9NPH9 171 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.47■□□□□ 0.87
CLN3-219ENST00000565778 SLC23A2Q9UGH3 650 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 ADGRG1Q9Y653 693 aa20.47■□□□□ 0.87
CLN3-219ENST00000565778 KIR2DS5A0A0G2JLQ3 304 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 PRAMEF33A0A0G2JMD5 474 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 A0A0G2JNG1 304 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 GRID2IPA4D2P6 1211 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 KIR2DS3K7RE56 304 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 HGSO14964 777 aaPredicted RBP20.46■□□□□ 0.87
CLN3-219ENST00000565778 CHUKO15111 745 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 KCNN4O15554 427 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 BUD23O43709 281 aaKnown RBP20.46■□□□□ 0.87
CLN3-219ENST00000565778 PRAMEF10O60809 474 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 STK10O94804 968 aaKnown RBP20.46■□□□□ 0.87
CLN3-219ENST00000565778 CCL4P13236 92 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 ZNF7P17097 686 aaPredicted RBP20.46■□□□□ 0.87
CLN3-219ENST00000565778 PTPN7P35236 360 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 CLCNKAP51800 687 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 CFHR1Q03591 330 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 TMEM115Q12893 351 aaPredicted RBP20.46■□□□□ 0.87
CLN3-219ENST00000565778 TRA2AQ13595 282 aaKnown RBP eCLIP20.46■□□□□ 0.87
CLN3-219ENST00000565778 PRPSAP1Q14558 356 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 KIR2DS5Q14953 304 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 PLA2G4EQ3MJ16 856 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 TMEM71Q6P5X7 295 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 CCDC81Q6ZN84 652 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 PEX26Q7Z412 305 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 TXLNBQ8N3L3 684 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 LRRC57Q8N9N7 239 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 ALG3Q92685 438 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 VPS35Q96QK1 796 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.46■□□□□ 0.87
CLN3-219ENST00000565778 IL17CQ9P0M4 197 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 IMPACTQ9P2X3 320 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 DNAJC16Q9Y2G8 782 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 PKP3Q9Y446 797 aa20.46■□□□□ 0.87
CLN3-219ENST00000565778 DUX1O43812 170 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 UGT1A9O60656 530 aa20.45■□□□□ 0.86
CLN3-219ENST00000565778 UGT1A6P19224 532 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms