RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TRA2AQ13595 282 aaKnown RBP eCLIP16.65■□□□□ 0.26
CLK3-210ENST00000563112 SIRPB2Q5JXA9 342 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 TMEM164Q5U3C3 297 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 IYDQ6PHW0 289 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 ADGRG6Q86SQ4 1221 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 AVL9Q8NBF6 648 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 ACRBPQ8NEB7 543 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 OR10G6Q8NH81 332 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 GDAP1Q8TB36 358 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 ACTL9Q8TC94 416 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 OXNAD1Q96HP4 312 aaPredicted RBP16.65■□□□□ 0.26
CLK3-210ENST00000563112 MRGPRX2Q96LB1 330 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 NUDT22Q9BRQ3 303 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 SARS2Q9NP81 518 aaKnown RBP16.65■□□□□ 0.26
CLK3-210ENST00000563112 KLC4Q9NSK0 619 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 TBC1D29Q9UFV1 150 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 REXO2Q9Y3B8 237 aaKnown RBP16.65■□□□□ 0.26
CLK3-210ENST00000563112 PCYT1BQ9Y5K3 369 aaPredicted RBP16.65■□□□□ 0.26
CLK3-210ENST00000563112 AHCTF1Q8WYP5 2266 aa16.65■□□□□ 0.26
CLK3-210ENST00000563112 KIR2DS5A0A0G2JLQ3 304 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 A0A0G2JNG1 304 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 KIR2DS3K7RE56 304 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 KMOO15229 486 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 DUX1O43812 170 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 ZNF189O75820 626 aaPredicted RBP16.64■□□□□ 0.25
CLK3-210ENST00000563112 CDK14O94921 469 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 TJP3O95049 919 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 F3P13726 295 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 ITIH1P19827 911 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 CLCNKAP51800 687 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 LIMK2P53671 638 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 OTUD4Q01804 1114 aaKnown RBP16.64■□□□□ 0.25
CLK3-210ENST00000563112 HHEXQ03014 270 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 KIF5AQ12840 1032 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 GTF2H3Q13889 308 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 PRPSAP1Q14558 356 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 KIR2DS5Q14953 304 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 SLC1A5Q15758 541 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 INSCQ1MX18 579 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.64■□□□□ 0.25
CLK3-210ENST00000563112 ZNF648Q5T619 568 aaPredicted RBP16.64■□□□□ 0.25
CLK3-210ENST00000563112 ARHGAP40Q5TG30 622 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 NKAIN2Q5VXU1 208 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 DARS2Q6PI48 645 aaKnown RBP16.64■□□□□ 0.25
CLK3-210ENST00000563112 ZNF574Q6ZN55 896 aaPredicted RBP16.64■□□□□ 0.25
CLK3-210ENST00000563112 LRRTM4Q86VH4 590 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 GAS2L3Q86XJ1 694 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 SYCE1Q8N0S2 351 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 OR4D9Q8NGE8 314 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 BLOC1S5Q8TDH9 187 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 TTC25Q96NG3 672 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 VPS35Q96QK1 796 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.64■□□□□ 0.25
CLK3-210ENST00000563112 LACRTQ9GZZ8 138 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 OSGEPL1Q9H4B0 414 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 CPNE5Q9HCH3 593 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 IMPACTQ9P2X3 320 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 AMFRQ9UKV5 643 aa16.64■□□□□ 0.25
CLK3-210ENST00000563112 IGHV5-10-1A0A0J9YXX1 117 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 GOLGA6L6A8MZA4 724 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 CHUKO15111 745 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 PPFIA2O75334 1257 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 EML2O95834 649 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 RBP3P10745 1247 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 CSTF2P33240 577 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLK3-210ENST00000563112 SPAM1P38567 509 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 CHRNA4P43681 627 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 EIF3EP60228 445 aaKnown RBP16.63■□□□□ 0.25
CLK3-210ENST00000563112 VAC14Q08AM6 782 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 NFATC2Q13469 925 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 C16orf72Q14CZ0 275 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 TMEM71Q6P5X7 295 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 CRTC3Q6UUV7 619 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 PEX26Q7Z412 305 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 GLT6D1Q7Z4J2 308 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 TTC30BQ8N4P2 665 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 UBL4BQ8N7F7 174 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 CCDC112Q8NEF3 446 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 DTX3LQ8TDB6 740 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 BRSK1Q8TDC3 778 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 USP7Q93009 1102 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 CCDC74BQ96LY2 380 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 GBA3Q9H227 469 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 C10orf88Q9H8K7 445 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 ACSL6Q9UKU0 697 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 AAR2Q9Y312 384 aaKnown RBP16.63■□□□□ 0.25
CLK3-210ENST00000563112 PKP3Q9Y446 797 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 ADGRG1Q9Y653 693 aa16.63■□□□□ 0.25
CLK3-210ENST00000563112 GOLGA6L9A6NEM1 432 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 KCNN4O15554 427 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 ZNF7P17097 686 aaPredicted RBP16.62■□□□□ 0.25
CLK3-210ENST00000563112 VCLP18206 1134 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 CD82P27701 267 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 CDC25BP30305 580 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 EPHA4P54764 986 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 RHDQ02161 417 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 CLN3Q13286 438 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 ATP13A5Q4VNC0 1218 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 CCDC81Q6ZN84 652 aa16.62■□□□□ 0.25
CLK3-210ENST00000563112 ZNF761Q86XN6 746 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms