RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PTERQ96BW5 349 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 MOCOSQ96EN8 888 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 COPS8Q99627 209 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 SYTL2Q9HCH5 934 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 ZDHHC3Q9NYG2 299 aa21.07■□□□□ 0.96
CLN3-209ENST00000561689 RRP15Q9Y3B9 282 aaKnown RBP21.07■□□□□ 0.96
CLN3-209ENST00000561689 EBAG9O00559 213 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 NPC1O15118 1278 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 MID1O15344 667 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 TRIM13O60858 407 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 LYPLA1O75608 230 aaPredicted RBP21.06■□□□□ 0.96
CLN3-209ENST00000561689 RPS3P23396 243 aaKnown RBP eCLIP21.06■□□□□ 0.964e-6■■□□□ 12.9
CLN3-209ENST00000561689 KCNC1P48547 511 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 DCDC1P59894 354 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 OCRLQ01968 901 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 FAM46CQ5VWP2 391 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 NAPRTQ6XQN6 538 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 RSPH9Q9H1X1 276 aaPredicted RBP21.06■□□□□ 0.96
CLN3-209ENST00000561689 NPHS2Q9NP85 383 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 GNPTGQ9UJJ9 305 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 NEMP2A6NFY4 417 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 WNT9AO14904 365 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 RBP1P09455 135 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 CLCN7P51798 805 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 B4GALNT1Q00973 533 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 TMEM196Q5HYL7 178 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 HENMT1Q5T8I9 393 aaKnown RBP21.06■□□□□ 0.96
CLN3-209ENST00000561689 LKAAEAR1Q8TD35 194 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 HLA-CQ95604 372 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 ULK4Q96C45 1275 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 HDAC8Q9BY41 377 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 THAP1Q9NVV9 213 aa21.06■□□□□ 0.96
CLN3-209ENST00000561689 H0Y858 1186 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 MMP20O60882 483 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 MTX2O75431 263 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 TRIM16O95361 564 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 CD9P21926 228 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 NTSR1P30989 418 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 ARRB2P32121 409 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 SKIV2L2P42285 1042 aaKnown RBP21.05■□□□□ 0.96
CLN3-209ENST00000561689 SLC1A6P48664 564 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 CST6Q15828 149 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 GPRC6AQ5T6X5 926 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 ATG14Q6ZNE5 492 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 CPNE9Q8IYJ1 553 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 AADATQ8N5Z0 425 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 IL17RCQ8NAC3 791 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 OR6Y1Q8NGX8 325 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 COQ10AQ96MF6 247 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 C7orf26Q96N11 449 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 C8orf33Q9H7E9 229 aaPredicted RBP21.05■□□□□ 0.96
CLN3-209ENST00000561689 RAD18Q9NS91 495 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 RGSL1A5PLK6 1076 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 FADS2P1A8MWK0 482 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 RNASEH1O60930 286 aaKnown RBP21.05■□□□□ 0.96
CLN3-209ENST00000561689 FOSL2P15408 326 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 GRK2P25098 689 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 DRD3P35462 400 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 NSG1P42857 185 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 GRSF1Q12849 480 aaKnown RBP eCLIP21.05■□□□□ 0.96
CLN3-209ENST00000561689 ITIH4Q14624 930 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 ZNF284Q2VY69 593 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 LIPMQ5VYY2 423 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 TRAM1L1Q8N609 369 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 ANKS4BQ8N8V4 417 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 TXNDC5Q8NBS9 432 aaKnown RBP21.05■□□□□ 0.96
CLN3-209ENST00000561689 EEF1AKMT1Q8WVE0 214 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 SREK1Q8WXA9 508 aaKnown RBP21.05■□□□□ 0.96
CLN3-209ENST00000561689 AP2M1Q96CW1 435 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 GATA5Q9BWX5 397 aaPredicted RBP21.05■□□□□ 0.96
CLN3-209ENST00000561689 IKZF3Q9UKT9 509 aa21.05■□□□□ 0.96
CLN3-209ENST00000561689 ZNF106Q9H2Y7 1883 aaKnown RBP21.04■□□□□ 0.96
CLN3-209ENST00000561689 PSMD11O00231 422 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 ADAM23O75077 832 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 SLC25A14O95258 325 aaPredicted RBP21.04■□□□□ 0.96
CLN3-209ENST00000561689 KLF8O95600 359 aaPredicted RBP21.04■□□□□ 0.96
CLN3-209ENST00000561689 E2F5Q15329 346 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 OR4D1Q15615 310 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 PIP5KL1Q5T9C9 394 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 SDE2Q6IQ49 451 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 MACC1Q6ZN28 852 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 DET1Q7L5Y6 550 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 RFWD2Q8NHY2 731 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 DNASE1L2Q92874 299 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 ZSCAN5AQ9BUG6 496 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 DERL2Q9GZP9 239 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 CDH19Q9H159 772 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 MARCOQ9UEW3 520 aaPredicted RBP21.04■□□□□ 0.96
CLN3-209ENST00000561689 MBD1Q9UIS9 605 aaPredicted RBP21.04■□□□□ 0.96
CLN3-209ENST00000561689 DCTN4Q9UJW0 460 aa21.04■□□□□ 0.96
CLN3-209ENST00000561689 RECQL5O94762 991 aaPredicted RBP21.03■□□□□ 0.96
CLN3-209ENST00000561689 TSPAN12O95859 305 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 TROVE2P10155 538 aaKnown RBP eCLIP21.03■□□□□ 0.96
CLN3-209ENST00000561689 KITP10721 976 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 C6P13671 934 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 ATP5F1P24539 256 aaPredicted RBP21.03■□□□□ 0.96
CLN3-209ENST00000561689 AKT1P31749 480 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 NAGLUP54802 743 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 IL2P60568 153 aa21.03■□□□□ 0.96
CLN3-209ENST00000561689 SMAD2Q15796 467 aaKnown RBP21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms