RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ANAPC7Q9UJX3 599 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 MAN2B2Q9Y2E5 1009 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 SLC30A1Q9Y6M5 507 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 TEX15Q9BXT5 2789 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 MYO1FO00160 1098 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 ZNF28P17035 718 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 PBX1P40424 430 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 GFERP55789 205 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 KLRB1Q12918 225 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 KRT81Q14533 505 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 FILIP1LQ4L180 1135 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 PRSS42Q7Z5A4 293 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 TMC3Q7Z5M5 1100 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 ADGRG6Q86SQ4 1221 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 PHYKPLQ8IUZ5 450 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 GPR26Q8NDV2 337 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 LPCAT1Q8NF37 534 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 CCHCR1Q8TD31 782 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 NUP85Q9BW27 656 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 SLC23A2Q9UGH3 650 aa16.2■□□□□ 0.18
CLN3-208ENST00000561505 A0A087X0T9 212 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 SMTNL1A8MU46 457 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 FAM228BP0C875 321 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 BRAFP15056 766 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 MX2P20592 715 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 IFI35P80217 286 aaPredicted RBP16.19■□□□□ 0.18
CLN3-208ENST00000561505 PPIDQ08752 370 aaKnown RBP16.19■□□□□ 0.18
CLN3-208ENST00000561505 SLC14A2Q15849 920 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 HADHQ16836 314 aaKnown RBP16.19■□□□□ 0.18
CLN3-208ENST00000561505 ATP1A1-AS1Q5TC04 95 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 AGAP9Q5VTM2 703 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 C6orf15Q6UXA7 325 aaPredicted RBP16.19■□□□□ 0.18
CLN3-208ENST00000561505 KDELC2Q7Z4H8 507 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 RBM12BQ8IXT5 1001 aaKnown RBP16.19■□□□□ 0.18
CLN3-208ENST00000561505 FAM26EQ8N5C1 309 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 TRAM1L1Q8N609 369 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 TIMM29Q9BSF4 260 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 ZSCAN5AQ9BUG6 496 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 NAT10Q9H0A0 1025 aaKnown RBP16.19■□□□□ 0.18
CLN3-208ENST00000561505 MAGEE1Q9HCI5 957 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 KLC4Q9NSK0 619 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 DTLQ9NZJ0 730 aa16.19■□□□□ 0.18
CLN3-208ENST00000561505 ZNF487B1APH4 448 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 K7EM74 188 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 UBXN7O94888 489 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 FURINP09958 794 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 GBE1Q04446 702 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 SEPT6Q14141 434 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.18■□□□□ 0.18
CLN3-208ENST00000561505 ANO6Q4KMQ2 910 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 C11orf96Q7Z7L8 435 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 ZNF547Q8IVP9 402 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 APLFQ8IW19 511 aaPredicted RBP16.18■□□□□ 0.18
CLN3-208ENST00000561505 CCDC13Q8IYE1 715 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 DTX3LQ8TDB6 740 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 GLYATL1Q969I3 302 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 FCRL4Q96PJ5 515 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 ADGRE3Q9BY15 652 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 ULBP3Q9BZM4 244 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 XPO4Q9C0E2 1151 aaKnown RBP16.18■□□□□ 0.18
CLN3-208ENST00000561505 OR2AG1Q9H205 316 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 ZFYVE1Q9HBF4 777 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 SLC40A1Q9NP59 571 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 RAD18Q9NS91 495 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 POT1Q9NUX5 634 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 TMPRSS11EQ9UL52 423 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 TP53TG5Q9Y2B4 290 aa16.18■□□□□ 0.18
CLN3-208ENST00000561505 MRPS18BQ9Y676 258 aaKnown RBP16.18■□□□□ 0.18
CLN3-208ENST00000561505 KMOO15229 486 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 VEGFDO43915 354 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 SNX2O60749 519 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 PROSCO94903 275 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 SLC25A14O95258 325 aaPredicted RBP16.17■□□□□ 0.18
CLN3-208ENST00000561505 JCHAINP01591 159 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 SERPING1P05155 500 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 ZNF7P17097 686 aaPredicted RBP16.17■□□□□ 0.18
CLN3-208ENST00000561505 CD86P42081 329 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 TAS2R40P59535 323 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 SH3BP2P78314 561 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 IQCB1Q15051 598 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 VSIG1Q86XK7 387 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 CPNE8Q86YQ8 564 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 LURAP1LQ8IV03 231 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 MAP7D3Q8IWC1 876 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 IMP4Q96G21 291 aaKnown RBP16.17■□□□□ 0.18
CLN3-208ENST00000561505 VPS35Q96QK1 796 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 ZMYND15Q9H091 742 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 KLHL3Q9UH77 587 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 KCND3Q9UK17 655 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 CROTQ9UKG9 612 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 POLHQ9Y253 713 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 PLAAQ9Y263 795 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 PCDHB3Q9Y5E6 796 aa16.17■□□□□ 0.18
CLN3-208ENST00000561505 UTP20O75691 2785 aaKnown RBP16.16■□□□□ 0.18
CLN3-208ENST00000561505 SPENQ96T58 3664 aaKnown RBP16.16■□□□□ 0.18
CLN3-208ENST00000561505 SPTAN1Q13813 2472 aaKnown RBP16.16■□□□□ 0.18
CLN3-208ENST00000561505 MBD3O95983 291 aa16.16■□□□□ 0.18
CLN3-208ENST00000561505 VIPP01282 170 aa16.16■□□□□ 0.18
CLN3-208ENST00000561505 NELFEP18615 380 aaKnown RBP16.16■□□□□ 0.18
CLN3-208ENST00000561505 DLSTP36957 453 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms