RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 CAPRIN2Q6IMN6 1127 aaKnown RBP12.48□□□□□ -0.41
SHMT2-230ENST00000557427 GDPD4Q6W3E5 623 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 PCGF5Q86SE9 256 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 TTC7BQ86TV6 843 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 PLPP6Q8IY26 295 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 KYQ8NBH2 561 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 PMEPA1Q969W9 287 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 TLCD1Q96CP7 247 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 FAF2Q96CS3 445 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 PGM2Q96G03 612 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 FEM1CQ96JP0 617 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 EXOC2Q96KP1 924 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 RNF157Q96PX1 679 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 MAK16Q9BXY0 300 aaKnown RBP12.48□□□□□ -0.41
SHMT2-230ENST00000557427 ROPN1BQ9BZX4 212 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-230ENST00000557427 PHACTR1Q9C0D0 580 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 CDC42EP4Q9H3Q1 356 aaKnown RBP12.48□□□□□ -0.41
SHMT2-230ENST00000557427 LRRN3Q9H3W5 708 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 ROPN1Q9HAT0 212 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-230ENST00000557427 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.48□□□□□ -0.41
SHMT2-230ENST00000557427 DONSONQ9NYP3 566 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 UBA2Q9UBT2 640 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-230ENST00000557427 APOBEC3BQ9UH17 382 aaKnown RBP12.48□□□□□ -0.41
SHMT2-230ENST00000557427 IPO11Q9UI26 975 aaKnown RBP12.48□□□□□ -0.41
SHMT2-230ENST00000557427 DOCK4Q8N1I0 1966 aa12.48□□□□□ -0.41
SHMT2-230ENST00000557427 CXorf51AA0A1B0GTR3 108 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 ARHGAP42A6NI28 874 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 K7EM74 188 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 SMAPO00193 183 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 NKX2-8O15522 239 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 ANXA6P08133 673 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 HCAR3P49019 387 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 VPS41P49754 854 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 NDST2P52849 883 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 DYNLT1P63172 113 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 P3H1Q32P28 736 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 ZNF805Q5CZA5 627 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 LRRC73Q5JTD7 316 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 ESRP1Q6NXG1 681 aaKnown RBP12.47□□□□□ -0.41
SHMT2-230ENST00000557427 ARHGAP36Q6ZRI8 547 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 PARS2Q7L3T8 475 aaKnown RBP12.47□□□□□ -0.41
SHMT2-230ENST00000557427 CCDC25Q86WR0 208 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 TP53INP2Q8IXH6 220 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 PHACTR4Q8IZ21 702 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 ARL10Q8N8L6 244 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 BTN2A2Q8WVV5 523 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 HAUS1Q96CS2 278 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 ZNF670Q9BS34 389 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 CAPS2Q9BXY5 557 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 PCDH18Q9HCL0 1135 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 SIRPGQ9P1W8 387 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 SHOC2Q9UQ13 582 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 MFHAS1Q9Y4C4 1052 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 FADS3Q9Y5Q0 445 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 ZFHX3Q15911 3703 aa12.47□□□□□ -0.41
SHMT2-230ENST00000557427 IGLON5A6NGN9 336 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 PRR19A6NJB7 356 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 H3BRJ5 948 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 PRAMEF11O60813 436 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 TTC4O95801 387 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 IGSF6O95976 241 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 SHBGP04278 402 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 PRKCGP05129 697 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 CCL4P13236 92 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 TIMP2P16035 220 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 PECAM1P16284 738 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-230ENST00000557427 CD82P27701 267 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 STIP1P31948 543 aaKnown RBP12.46□□□□□ -0.41
SHMT2-230ENST00000557427 ARL4AP40617 200 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 EIF3EP60228 445 aaKnown RBP12.46□□□□□ -0.41
SHMT2-230ENST00000557427 RPS21P63220 83 aaKnown RBP12.46□□□□□ -0.41
SHMT2-230ENST00000557427 GPS1Q13098 491 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 SGCGQ13326 291 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 C16orf72Q14CZ0 275 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 DPYSL2Q16555 572 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 RNASEH2BQ5TBB1 312 aaKnown RBP12.46□□□□□ -0.41
SHMT2-230ENST00000557427 SLC9A4Q6AI14 798 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 PSTKQ8IV42 348 aaKnown RBP12.46□□□□□ -0.41
SHMT2-230ENST00000557427 SLITRK4Q8IW52 837 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 SRRM1Q8IYB3 904 aaKnown RBP12.46□□□□□ -0.41
SHMT2-230ENST00000557427 GLIS1Q8NBF1 620 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-230ENST00000557427 TMEM159Q96B96 161 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 TBATAQ96M53 351 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 LENG8Q96PV6 779 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-230ENST00000557427 TMEM121Q9BTD3 319 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 STMN4Q9H169 189 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-230ENST00000557427 SEMA6CQ9H3T2 930 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 ETNK2Q9NVF9 386 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 LHX3Q9UBR4 397 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 GGT7Q9UJ14 662 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 ITM2BQ9Y287 266 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 RNF215Q9Y6U7 377 aa12.46□□□□□ -0.41
SHMT2-230ENST00000557427 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-230ENST00000557427 CFAP69A5D8W1 941 aa12.45□□□□□ -0.42
SHMT2-230ENST00000557427 STMND1H3BQB6 276 aa12.45□□□□□ -0.42
SHMT2-230ENST00000557427 FPGTO14772 594 aa12.45□□□□□ -0.42
SHMT2-230ENST00000557427 APOL1O14791 398 aa12.45□□□□□ -0.42
SHMT2-230ENST00000557427 DUX1O43812 170 aa12.45□□□□□ -0.42
SHMT2-230ENST00000557427 PIGNO95427 931 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms