RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 GRK2P25098 689 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 MSX2P35548 267 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 ATXN1P54253 815 aaKnown RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 SLC25A11Q02978 314 aaKnown RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 DMPKQ09013 629 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 GRSF1Q12849 480 aaKnown RBP eCLIP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 FGD3Q5JSP0 725 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 GPR107Q5VW38 600 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 ANKRD26P1Q6NSI1 321 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 POLNQ7Z5Q5 900 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 TAC4Q86UU9 113 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 ZNF354CQ86Y25 554 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 DSELQ8IZU8 1212 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 MYO1HQ8N1T3 1032 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 SLC15A4Q8N697 577 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 TNIP2Q8NFZ5 429 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 ADAMTS16Q8TE57 1224 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 MYEOVQ96EZ4 313 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 KLHL32Q96NJ5 620 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 LENG8Q96PV6 779 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 BBS2Q9BXC9 721 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 FRMD8Q9BZ67 464 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 EHD1Q9H4M9 534 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 SAE1Q9UBE0 346 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-216ENST00000552909 DKK3Q9UBP4 350 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 SEPT3Q9UH03 358 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 KLHL3Q9UH77 587 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 DAPK2Q9UIK4 370 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 ERVK-11Q9UQG0 969 aa7.63□□□□□ -1.19
LIMA1-216ENST00000552909 SYNJ2BP-COX16A0A087WUM0 186 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 CFLARO15519 480 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 HOXC11O43248 304 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-216ENST00000552909 ZBTB14O43829 449 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 TSPAN3O60637 253 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 KLHL41O60662 606 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 TULP3O75386 442 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 IGLV3-27P01718 113 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 CD247P20963 164 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 PRKCHP24723 683 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 GABRB3P28472 473 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 HOXD11P31277 338 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-216ENST00000552909 NOS2P35228 1153 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 SULT1E1P49888 294 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 SGSHP51688 502 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 ATXN3P54252 364 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-216ENST00000552909 PKNOX1P55347 436 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 SEC13P55735 322 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 MS4A2Q01362 244 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 NHLH1Q02575 133 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 EIF4EBP2Q13542 120 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-216ENST00000552909 DPYSL3Q14195 570 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 SLC25A52Q3SY17 297 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 C2orf27AQ580R0 203 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 SNX32Q86XE0 403 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 FAM47BQ8NA70 645 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 PTCD2Q8WV60 388 aaKnown RBP7.62□□□□□ -1.19
LIMA1-216ENST00000552909 CENPIQ92674 756 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-216ENST00000552909 HPS1Q92902 700 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 PLD4Q96BZ4 506 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 SLC39A13Q96H72 371 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 FCRL2Q96LA5 508 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-216ENST00000552909 PEBP4Q96S96 227 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 TBCBQ99426 244 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 PSD2Q9BQI7 771 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 C1orf50Q9BV19 199 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 OSBPL10Q9BXB5 764 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 NPLQ9BXD5 320 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-216ENST00000552909 SEMA6AQ9H2E6 1030 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 COX16Q9P0S2 106 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 ZC3H7BQ9UGR2 993 aaKnown RBP7.62□□□□□ -1.19
LIMA1-216ENST00000552909 CORINQ9Y5Q5 1042 aa7.62□□□□□ -1.19
LIMA1-216ENST00000552909 M0QYT0 321 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 ZNF195O14628 629 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 HTRA2O43464 458 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 LAMTOR5O43504 91 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 CST8O60676 142 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 KAT7O95251 611 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 IGLV3-25P01717 112 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 DRD1P21728 446 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 KDELR1P24390 212 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 SLC6A4P31645 630 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 SERPINB5P36952 375 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 PTPN9P43378 593 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 HARS2P49590 506 aaKnown RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 SERPINB9P50453 376 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 CCT8P50990 548 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 TBX4P57082 545 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 EIF3EP60228 445 aaKnown RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 CSTF1Q05048 431 aaKnown RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 NME3Q13232 169 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 CEACAM7Q14002 265 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 OXA1LQ15070 435 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 BOLA3Q53S33 107 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 DGKKQ5KSL6 1271 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 MROH9Q5TGP6 573 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 OTUD1Q5VV17 481 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 NADSYN1Q6IA69 706 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 TTC33Q6PID6 262 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-216ENST00000552909 BEND5Q7L4P6 421 aa7.61□□□□□ -1.19
LIMA1-216ENST00000552909 CYP2U1Q7Z449 544 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms