RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 RFLNAQ6ZTI6 216 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 MARK2Q7KZI7 788 aaKnown RBP7.56□□□□□ -1.2
NEK3-201ENST00000550331 PTRH1Q86Y79 214 aaKnown RBP7.56□□□□□ -1.2
NEK3-201ENST00000550331 IL22RA1Q8N6P7 574 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 BMPERQ8N8U9 685 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 OR10G6Q8NH81 332 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 SLC37A2Q8TED4 501 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 ART4Q93070 314 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 SCAMP4Q969E2 229 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 PMEPA1Q969W9 287 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 TSGA13Q96PP4 275 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 TEFMQ96QE5 360 aaKnown RBP7.56□□□□□ -1.2
NEK3-201ENST00000550331 SLC38A3Q99624 504 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 ZNF670Q9BS34 389 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 SLC12A9Q9BXP2 914 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 THAP2Q9H0W7 228 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 SLC25A18Q9H1K4 315 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 STN1Q9H668 368 aaKnown RBP7.56□□□□□ -1.2
NEK3-201ENST00000550331 RMI1Q9H9A7 625 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 SARS2Q9NP81 518 aaKnown RBP7.56□□□□□ -1.2
NEK3-201ENST00000550331 TMEM63CQ9P1W3 806 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 CD84Q9UIB8 345 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 TUBD1Q9UJT1 453 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 TMEM98Q9Y2Y6 226 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 B3GALT1Q9Y5Z6 326 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 CACNA1DQ01668 2161 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 LRRK1Q38SD2 2015 aa7.56□□□□□ -1.2
NEK3-201ENST00000550331 A0A0U1RQS6 177 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 RGSL1A5PLK6 1076 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 MYO1FO00160 1098 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 MATN3O15232 486 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 INPP4BO15327 924 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 RAD1O60671 282 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 DNAJC6O75061 913 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 SERPINC1P01008 464 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 PRLP01236 227 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 SERPING1P05155 500 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 CD48P09326 243 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 SLC2A4P14672 509 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 LIFP15018 202 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 MPSTP25325 297 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 EPHA4P54764 986 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 DSC2Q02487 901 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 HHEXQ03014 270 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 DPYSL3Q14195 570 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 IHHQ14623 411 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 IFI16Q16666 785 aaKnown RBP7.55□□□□□ -1.2
NEK3-201ENST00000550331 SKIDA1Q1XH10 827 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 CCDC122Q5T0U0 273 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.55□□□□□ -1.2
NEK3-201ENST00000550331 HENMT1Q5T8I9 393 aaKnown RBP7.55□□□□□ -1.2
NEK3-201ENST00000550331 TRIM74Q86UV6 250 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 FAM129CQ86XR2 697 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 AVL9Q8NBF6 648 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 ARRDC2Q8TBH0 407 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 JPH3Q8WXH2 748 aaPredicted RBP7.55□□□□□ -1.2
NEK3-201ENST00000550331 SH3KBP1Q96B97 665 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 HDAC11Q96DB2 347 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 IQCDQ96DY2 449 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 AHCYL2Q96HN2 611 aaKnown RBP7.55□□□□□ -1.2
NEK3-201ENST00000550331 BTBD6Q96KE9 485 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 NAP1L5Q96NT1 182 aaPredicted RBP7.55□□□□□ -1.2
NEK3-201ENST00000550331 CATSPER2Q96P56 530 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 AGAP2Q99490 1192 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 ZPBPQ9BS86 351 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 HERPUD2Q9BSE4 406 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 RIOK2Q9BVS4 552 aaKnown RBP7.55□□□□□ -1.2
NEK3-201ENST00000550331 NUP85Q9BW27 656 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 ZMYND15Q9H091 742 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 EPN3Q9H201 632 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 EPB41L1Q9H4G0 881 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 PCDH9Q9HC56 1237 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 RBM22Q9NW64 420 aaKnown RBP eCLIP7.55□□□□□ -1.2
NEK3-201ENST00000550331 SLC39A1Q9NY26 324 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 PKD2L2Q9NZM6 624 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 TMEM9Q9P0T7 183 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 LCMT1Q9UIC8 334 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 PILRAQ9UKJ1 303 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 MAN2B2Q9Y2E5 1009 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 PLEKHM1Q9Y4G2 1056 aa7.55□□□□□ -1.2
NEK3-201ENST00000550331 A0A087X0T9 212 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 C1orf232A0A0U1RR37 186 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 A6NCN8 305 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 OR5K4A6NMS3 321 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 EFCAB7A8K855 629 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 ZNF891A8MT65 544 aaPredicted RBP7.54□□□□□ -1.2
NEK3-201ENST00000550331 ANKRD66B4E2M5 251 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 GPR89AB7ZAQ6 455 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 CFAP99D6REC4 459 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 MAP3K6O95382 1288 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 CLDN7O95471 211 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 ASMTLO95671 621 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 EML2O95834 649 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 HLA-DQB2P05538 268 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 FAM228BP0C875 321 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 GPR89BP0CG08 455 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 F3P13726 295 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 MAP4P27816 1152 aaKnown RBP7.54□□□□□ -1.2
NEK3-201ENST00000550331 PBX1P40424 430 aa7.54□□□□□ -1.2
NEK3-201ENST00000550331 SSR1P43307 286 aaKnown RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms