RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 SERPINA6P08185 405 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 F7P08709 466 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-215ENST00000547672 GSTM1P09488 218 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 SBK3P0C264 359 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 ELFN1P0C7U0 828 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 KITP10721 976 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 GFAPP14136 432 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 EZRP15311 586 aaKnown RBP13.31□□□□□ -0.28
PTCH1-215ENST00000547672 OPRD1P41143 372 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 SCTRP47872 440 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 CDKN1CP49918 316 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-215ENST00000547672 CCR3P51677 355 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 IRX1P78414 480 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-215ENST00000547672 GSTM4Q03013 218 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 KDSRQ06136 332 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 SF3A3Q12874 501 aaKnown RBP eCLIP13.31□□□□□ -0.28
PTCH1-215ENST00000547672 GAB4Q2WGN9 574 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 ARL13AQ5H913 290 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-215ENST00000547672 CDKL4Q5MAI5 379 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 TMEM207Q6UWW9 146 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 EP400NLQ6ZTU2 488 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 EFL1Q7Z2Z2 1120 aaKnown RBP13.31□□□□□ -0.28
PTCH1-215ENST00000547672 TRMT11Q7Z4G4 463 aaKnown RBP13.31□□□□□ -0.28
PTCH1-215ENST00000547672 TSPAN33Q86UF1 283 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 C12orf40Q86WS4 652 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 GPSM1Q86YR5 675 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 PLCD3Q8N3E9 789 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 GPR26Q8NDV2 337 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 PIP4K2CQ8TBX8 421 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 ERP27Q96DN0 273 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 RMDN2Q96LZ7 410 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 RAB3IPQ96QF0 476 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-215ENST00000547672 VPS35Q96QK1 796 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 SMIM14Q96QK8 99 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 SORT1Q99523 831 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 HDAC8Q9BY41 377 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 TRIM54Q9BYV2 358 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 ZCCHC2Q9C0B9 1178 aaKnown RBP13.31□□□□□ -0.28
PTCH1-215ENST00000547672 TRPV5Q9NQA5 729 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 SLC12A4Q9UP95 1085 aa13.31□□□□□ -0.28
PTCH1-215ENST00000547672 IGLV3-16A0A075B6K0 115 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 A8MT66 165 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 A8MX80 341 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 MATN2O00339 956 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 BTN3A1O00481 513 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 NEMP1O14524 444 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 GAPDHSO14556 408 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-215ENST00000547672 GIPC1O14908 333 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 RAD51BO15315 384 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 ZBTB14O43829 449 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 OR1I1O60431 355 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 SYNCRIPO60506 623 aaKnown RBP13.3□□□□□ -0.28
PTCH1-215ENST00000547672 SLC25A14O95258 325 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-215ENST00000547672 MLYCDO95822 493 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 FTH1P02794 183 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 ATP1B2P14415 290 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-215ENST00000547672 UGT1A6P19224 532 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 MSH3P20585 1137 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 UGT1A1P22309 533 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 UGT1A4P22310 534 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 ADSLP30566 484 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-215ENST00000547672 UGT1A3P35503 534 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 UGT1A5P35504 534 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 CLCN7P51798 805 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 ALDH18A1P54886 795 aaKnown RBP13.3□□□□□ -0.28
PTCH1-215ENST00000547672 TIAL1Q01085 375 aaKnown RBP eCLIP13.3□□□□□ -0.28
PTCH1-215ENST00000547672 CTSL3PQ5NE16 218 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 ANKS6Q68DC2 871 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 CLNKQ7Z7G1 428 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 PIM3Q86V86 326 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 PHTF2Q8N3S3 785 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 FBXO39Q8N4B4 442 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 SPATA6LQ8N4H0 392 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 ZBTB2Q8N680 514 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 TXNDC5Q8NBS9 432 aaKnown RBP13.3□□□□□ -0.28
PTCH1-215ENST00000547672 CD200R1Q8TD46 325 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 SGF29Q96ES7 293 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 LINGO1Q96FE5 620 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 NSL1Q96IY1 281 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 CCT7Q99832 543 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 KXD1Q9BQD3 176 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 CCDC28BQ9BUN5 200 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 FAM126AQ9BYI3 521 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-215ENST00000547672 MYLK2Q9H1R3 596 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 C8orf33Q9H7E9 229 aaPredicted RBP13.3□□□□□ -0.28
PTCH1-215ENST00000547672 SARS2Q9NP81 518 aaKnown RBP13.3□□□□□ -0.28
PTCH1-215ENST00000547672 NUDT4Q9NZJ9 180 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 ATG2AQ2TAZ0 1938 aa13.3□□□□□ -0.28
PTCH1-215ENST00000547672 SUPT3HB4E1H0 165 aa13.29□□□□□ -0.28
PTCH1-215ENST00000547672 SLC22A2O15244 555 aa13.29□□□□□ -0.28
PTCH1-215ENST00000547672 NIPSNAP2O75323 286 aa13.29□□□□□ -0.28
PTCH1-215ENST00000547672 SUPT3HO75486 399 aa13.29□□□□□ -0.28
PTCH1-215ENST00000547672 LYPLA1O75608 230 aaPredicted RBP13.29□□□□□ -0.28
PTCH1-215ENST00000547672 SUPT7LO94864 414 aa13.29□□□□□ -0.28
PTCH1-215ENST00000547672 UNC5CO95185 931 aa13.29□□□□□ -0.28
PTCH1-215ENST00000547672 TRIM16O95361 564 aa13.29□□□□□ -0.28
PTCH1-215ENST00000547672 ADH1BP00325 375 aa13.29□□□□□ -0.28
PTCH1-215ENST00000547672 C1SP09871 688 aa13.29□□□□□ -0.28
PTCH1-215ENST00000547672 PRSS56P0CW18 603 aa13.29□□□□□ -0.28
PTCH1-215ENST00000547672 GLULP15104 373 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms