RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, human

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33A-208	ENST00000543633	C1orf50	Q9BV19	199 aa		13.63	□□□□□ -0.23
VPS33A-208	ENST00000543633	POLR1E	Q9GZS1	481 aa	Known RBP	13.63	□□□□□ -0.23
VPS33A-208	ENST00000543633	GPN2	Q9H9Y4	310 aa	Predicted RBP	13.63	□□□□□ -0.23
VPS33A-208	ENST00000543633	GIMAP2	Q9UG22	337 aa		13.63	□□□□□ -0.23
VPS33A-208	ENST00000543633	SCML2	Q9UQR0	700 aa		13.63	□□□□□ -0.23
VPS33A-208	ENST00000543633	BTRC	Q9Y297	605 aa		13.63	□□□□□ -0.23
VPS33A-208	ENST00000543633	VPS9D1	Q9Y2B5	631 aa		13.63	□□□□□ -0.23
VPS33A-208	ENST00000543633	DOCK3	Q8IZD9	2030 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	OR51F1	A6NGY5	319 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	ZNF623	O75123	536 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	SEC24D	O94855	1032 aa	Predicted RBP	13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	MTHFD1	P11586	935 aa	Known RBP	13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	CCNA2	P20248	432 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	RPL10	P27635	214 aa	Known RBP	13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	C21orf59	P57076	290 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	YBEY	P58557	167 aa	Predicted RBP	13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	GABARAPL2	P60520	117 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	PHEX	P78562	749 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	NFATC3	Q12968	1075 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	DAG1	Q14118	895 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	LRRTM3	Q86VH5	581 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	MON1A	Q86VX9	555 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	ZFAND4	Q86XD8	727 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	HID1	Q8IV36	788 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	KIAA2013	Q8IYS2	634 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	RYBP	Q8N488	228 aa	Predicted RBP	13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	GIPC3	Q8TF64	312 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	PPP1R13L	Q8WUF5	828 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	TRUB1	Q8WWH5	349 aa	Known RBP	13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	PABPC5	Q96DU9	382 aa	Known RBP	13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	PLEKHA8	Q96JA3	519 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	SUSD3	Q96L08	255 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	NSMCE2	Q96MF7	247 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	KCNA7	Q96RP8	456 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	AP5M1	Q9H0R1	490 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	HEBP1	Q9NRV9	189 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	SEPT3	Q9UH03	358 aa		13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633	ABT1	Q9ULW3	272 aa	Known RBP	13.62	□□□□□ -0.23
VPS33A-208	ENST00000543633		A0A1W2PPW3	197 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633		A0A1W2PQH9	124 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	LRRC14B	A6NHZ5	514 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	ARNTL	O00327	626 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	PPP6C	O00743	305 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	MAGEB3	O15480	346 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	ABCB7	O75027	752 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	SNAP29	O95721	258 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	C1R	P00736	705 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	HAPLN1	P10915	354 aa	Predicted RBP	13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	POR	P16435	677 aa	Predicted RBP	13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	HOXB6	P17509	224 aa	Known RBP	13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	HRH2	P25021	359 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	TM4SF4	P48230	202 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	DIO3	P55073	304 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	TBX4	P57082	545 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	MTA1	Q13330	715 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	IHH	Q14623	411 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	RABL3	Q5HYI8	236 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	MS4A13	Q5J8X5	152 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	PAGE3	Q5JUK9	113 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	MORN1	Q5T089	497 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	ANKRD26P1	Q6NSI1	321 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	AFTPH	Q6ULP2	937 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	CD300LG	Q6UXG3	332 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	OFCC1	Q8IZS5	231 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	PGBD5	Q8N414	524 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	OR56A4	Q8NGH8	313 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	MAGEE2	Q8TD90	523 aa	Predicted RBP	13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	POP5	Q969H6	163 aa	Known RBP	13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	BIRC7	Q96CA5	298 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	CCDC115	Q96NT0	180 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	KLHL5	Q96PQ7	755 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	PAIP1	Q9H074	479 aa	Known RBP	13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	NMUR1	Q9HB89	426 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	NLE1	Q9NVX2	485 aa	Predicted RBP	13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	PCTP	Q9UKL6	214 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	CCL22	O00626	93 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	ECI2	O75521	394 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	B3GAT3	O94766	335 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	RHOBTB1	O94844	696 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	RAP2A	P10114	183 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	THRB	P10828	461 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	MAPKAPK2	P49137	400 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	AFF1	P51825	1210 aa	Known RBP	13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	ARSF	P54793	590 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	KCNC4	Q03721	635 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	PRKG2	Q13237	762 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	TUSC3	Q13454	348 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	SERINC3	Q13530	473 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	SEMA3A	Q14563	771 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	NANOGP8	Q6NSW7	305 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	DNAJB14	Q8TBM8	379 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	SH3RF2	Q8TEC5	729 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	CHPT1	Q8WUD6	406 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	HDAC2	Q92769	488 aa	Known RBP	13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	LPP	Q93052	612 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	PSMG2	Q969U7	264 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	ACD	Q96AP0	544 aa		13.61	□□□□□ -0.23
VPS33A-208	ENST00000543633	AURKB	Q96GD4	344 aa	Predicted RBP	13.61	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms