RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 NYNRINQ9P2P1 1898 aaKnown RBP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 KDELR3O43731 214 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 SLC25A14O95258 325 aaPredicted RBP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 PAPSS2O95340 614 aaPredicted RBP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 IGHA2P01877 340 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 CAPN1P07384 714 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 SLC2A4P14672 509 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 HTR6P50406 440 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 TIAL1Q01085 375 aaKnown RBP eCLIP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 HSPA14Q0VDF9 509 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 MRPL58Q14197 206 aaKnown RBP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 ADGRE1Q14246 886 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 TRIM60Q495X7 471 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 FOXB2Q5VYV0 432 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 OR52E8Q6IFG1 317 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 RFLNAQ6ZTI6 216 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 TSPAN33Q86UF1 283 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 LCA5Q86VQ0 697 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 SERPINA9Q86WD7 417 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 FUNDC1Q8IVP5 155 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 CMTM8Q8IZV2 173 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 ZNF461Q8TAF7 563 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 CYGBQ8WWM9 190 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 ULK4Q96C45 1275 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 IGSF21Q96ID5 467 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 TMEM79Q9BSE2 394 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 TBCDQ9BTW9 1192 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 MRPL9Q9BYD2 267 aaKnown RBP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 Q9H521 79 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 NSUN3Q9H649 340 aaKnown RBP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 MEAF6Q9HAF1 191 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 PAPOLBQ9NRJ5 636 aaKnown RBP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 UPK3BL1B0FP48 263 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 UPK3BL2E5RIL1 263 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 HSPA8P11142 646 aaKnown RBP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 POLD2P49005 469 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 EPHB3P54753 998 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 HMGCS1Q01581 520 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 BCL2L1Q07817 233 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 LCP2Q13094 533 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 TAF1AQ15573 450 aaPredicted RBP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 CYP51A1Q16850 503 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 OTUD3Q5T2D3 398 aaPredicted RBP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 YME1L1Q96TA2 773 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 BEGAINQ9BUH8 593 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 VN1R3Q9BXE9 311 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 SOX17Q9H6I2 414 aaPredicted RBP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 ZDHHC6Q9H6R6 413 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 TMEM39AQ9NV64 488 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 NLE1Q9NVX2 485 aaPredicted RBP8.63□□□□□ -1.03
UBE3B-208ENST00000538070 WWOXQ9NZC7 414 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 MYO16Q9Y6X6 1858 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 TSC2P49815 1807 aa8.63□□□□□ -1.03
UBE3B-208ENST00000538070 TMEM189-UBE2V1I3L0A0 370 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 NFKBIAP25963 317 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 CTSOP43234 321 aaPredicted RBP8.62□□□□□ -1.03
UBE3B-208ENST00000538070 CHN2P52757 468 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 DEFB103AP81534 67 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 RING1Q06587 406 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 DDX39BQ13838 428 aaKnown RBP8.62□□□□□ -1.03
UBE3B-208ENST00000538070 BOP1Q14137 746 aaKnown RBP8.62□□□□□ -1.03
UBE3B-208ENST00000538070 IKBKEQ14164 716 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 GPRIN3Q6ZVF9 776 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 FAM126BQ8IXS8 530 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 OR10Q1Q8NGQ4 319 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 FUBP1Q96AE4 644 aaKnown RBP8.62□□□□□ -1.03
UBE3B-208ENST00000538070 PYCR2Q96C36 320 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 MGME1Q9BQP7 344 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 CENPKQ9BS16 269 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 FEM1AQ9BSK4 669 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 ZNF334Q9HCZ1 680 aaPredicted RBP8.62□□□□□ -1.03
UBE3B-208ENST00000538070 KLQ9UEF7 1012 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 DOCK6Q96HP0 2047 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 MIA3Q5JRA6 1907 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 CCDC154A6NI56 674 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 INPPL1O15357 1258 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 BCAS2O75934 225 aaPredicted RBP8.62□□□□□ -1.03
UBE3B-208ENST00000538070 HMGA1P17096 107 aaKnown RBP8.62□□□□□ -1.03
UBE3B-208ENST00000538070 AKT1P31749 480 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 CA5AP35218 305 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 TTPAP49638 278 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 ZNF140P52738 457 aaPredicted RBP8.62□□□□□ -1.03
UBE3B-208ENST00000538070 IL1RL1Q01638 556 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 CPSF6Q16630 551 aaKnown RBP eCLIP8.62□□□□□ -1.03
UBE3B-208ENST00000538070 IMPG1Q17R60 797 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 SAMD4BQ5PRF9 694 aaKnown RBP8.62□□□□□ -1.03
UBE3B-208ENST00000538070 SLC30A9Q6PML9 568 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 SLC2A7Q6PXP3 512 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 CYHR1Q6ZMK1 362 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 LARP4Q71RC2 724 aaKnown RBP eCLIP8.62□□□□□ -1.03
UBE3B-208ENST00000538070 BBS7Q8IWZ6 715 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 CPSF7Q8N684 471 aaKnown RBP8.62□□□□□ -1.03
UBE3B-208ENST00000538070 TRIML2Q8N7C3 387 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 PBXIP1Q96AQ6 731 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 MYO19Q96H55 970 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 VPS50Q96JG6 964 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 RANBP9Q96S59 729 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 ATOH8Q96SQ7 321 aa8.62□□□□□ -1.03
UBE3B-208ENST00000538070 SLC29A1Q99808 456 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms