RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ARSIQ5FYB1 569 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 SIRPB2Q5JXA9 342 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 MINDY1Q8N5J2 469 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 ACVR1CQ8NER5 493 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 IL21RQ9HBE5 538 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 TMEM216Q9P0N5 145 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 SLC39A10Q9ULF5 831 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 CEP192Q8TEP8 1941 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 TBC1D3DA0A087WVF3 549 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 TBC1D3IA0A087WXS9 549 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 TBC1D3EA0A087X179 549 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 TBC1D3KA0A087X1G2 549 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 A0A1B0GTW7 788 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 A0A1B0GVT2 93 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 LOC285095A0A1B0GVY8 99 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 TBC1D3FA6NER0 549 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-208ENST00000537004 TBC1D3LB9A6J9 549 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 H0YHG0 523 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 WNT9AO14904 365 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 KDELR3O43731 214 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 LEFTY1O75610 366 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 DCTN3O75935 186 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 AHSGP02765 367 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 PRKCGP05129 697 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 TBC1D3HP0C7X1 549 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 GABRB3P28472 473 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 MAT2AP31153 395 aaKnown RBP11.88□□□□□ -0.51
CLIP1-208ENST00000537004 ATXN3P54252 364 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-208ENST00000537004 MPP1Q00013 466 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 CTBP1Q13363 440 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 THOC5Q13769 683 aaKnown RBP11.88□□□□□ -0.51
CLIP1-208ENST00000537004 SETDB1Q15047 1291 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 AGBL4Q5VU57 503 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 TBC1D3GQ6DHY5 549 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 ALG1LQ6GMV1 187 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 TBC1D3CQ6IPX1 549 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 ERMP1Q7Z2K6 904 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 CCDC91Q7Z6B0 441 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 DSG4Q86SJ6 1040 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 DENND6AQ8IWF6 608 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 TBC1D3Q8IZP1 549 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-208ENST00000537004 PLD6Q8N2A8 252 aaKnown RBP11.88□□□□□ -0.51
CLIP1-208ENST00000537004 BBS5Q8N3I7 341 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 C7orf26Q96N11 449 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 LRRC37BQ96QE4 947 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 FAM167BQ9BTA0 163 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 TM9SF3Q9HD45 589 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 ZNF358Q9NW07 568 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 UBA2Q9UBT2 640 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-208ENST00000537004 SUSD2Q9UGT4 822 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 FZD4Q9ULV1 537 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 CHKBQ9Y259 395 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 WASF2Q9Y6W5 498 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 CELSR3Q9NYQ7 3312 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 CABIN1Q9Y6J0 2220 aa11.88□□□□□ -0.51
CLIP1-208ENST00000537004 A0A0G2JND7 137 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 DNAJC8O75937 253 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-208ENST00000537004 C2P06681 752 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 ATXN1LP0C7T5 689 aaKnown RBP11.87□□□□□ -0.51
CLIP1-208ENST00000537004 DPP6P42658 865 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 SLC1A2P43004 574 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 CCNHP51946 323 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-208ENST00000537004 TAS2R38P59533 333 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 IRF9Q00978 393 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 OCRLQ01968 901 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 BNIP1Q12981 228 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 PCLAFQ15004 111 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 CCDC153Q494R4 210 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 ATXN7L2Q5T6C5 722 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-208ENST00000537004 TSTD2Q5T7W7 516 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 KIAA0895LQ68EN5 471 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 ZNF470Q6ECI4 717 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 NLRP9Q7RTR0 991 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 CLEC14AQ86T13 490 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 OR2T34Q8NGX1 318 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 VOPP1Q96AW1 172 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 ARRDC3Q96B67 414 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 IFT43Q96FT9 208 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 FEM1CQ96JP0 617 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 MGME1Q9BQP7 344 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 MYLK2Q9H1R3 596 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 SEPT3Q9UH03 358 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 ADAMTS9Q9P2N4 1935 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 MROH6A6NGR9 719 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 LRRC72A6NJI9 287 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 C1QTNF3-AMACRE9PGA6 284 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 SNNO75324 88 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-208ENST00000537004 SAT1P21673 171 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 CD27P26842 260 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 RECQLP46063 649 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-208ENST00000537004 CSRP3P50461 194 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 CDK18Q07002 472 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 STX3Q13277 289 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 PRAMEF14Q5SWL7 426 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 FAM46CQ5VWP2 391 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 NEPROQ6NW34 567 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 ZCCHC23Q6ZST2 131 aa11.87□□□□□ -0.51
CLIP1-208ENST00000537004 RYBPQ8N488 228 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-208ENST00000537004 C2CD4AQ8NCU7 369 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-208ENST00000537004 OR13J1Q8NGT2 312 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms