RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 PHACTR4Q8IZ21 702 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 TMEM199Q8N511 208 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 SNRNP27Q8WVK2 155 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 TMEM175Q9BSA9 504 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 DHRS4Q9BTZ2 278 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 OSGEPL1Q9H4B0 414 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 POLR1BQ9H9Y6 1135 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 ADGRE2Q9UHX3 823 aa10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 SAMD4AQ9UPU9 718 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-205ENST00000503057 MATN2O00339 956 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 STK16O75716 305 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 KRT8P05787 483 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 ADARP55265 1226 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 C1DQ13901 141 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 TRIM60Q495X7 471 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 MS4A13Q5J8X5 152 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 ZNF605Q86T29 641 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 OOSP2Q86WS3 158 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 KRT78Q8N1N4 520 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 ARFGAP1Q8N6T3 406 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 OR13C4Q8NGS5 318 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 ASZ1Q8WWH4 475 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 SUCOQ9UBS9 1254 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 ILVBLA1L0T0 632 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 ARHGEF9O43307 516 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 IL23RQ5VWK5 629 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 TMEM198Q66K66 360 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 ARMC6Q6NXE6 501 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 ARHGAP36Q6ZRI8 547 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 FIBCD1Q8N539 461 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 CLP1Q92989 425 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 FADS3Q9Y5Q0 445 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 XIRP1Q702N8 1843 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 NEMP2A6NFY4 417 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 OR4F21O95013 312 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 F7P08709 466 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 ITGA2P17301 1181 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 THOP1P52888 689 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 RAB6CQ53S08 254 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 LDLRAD1Q5T700 205 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 DEPDC1Q5TB30 811 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 R3HCC1LQ7Z5L2 792 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 TMEM135Q86UB9 458 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 CILP2Q8IUL8 1156 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 RAB6CQ9H0N0 254 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 DNAJC11Q9NVH1 559 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 TRPC4Q9UBN4 977 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 EIF2B4Q9UI10 523 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 PPM1HQ9ULR3 514 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 FCF1Q9Y324 198 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 ANKDD1BA6NHY2 528 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 KPNA4O00629 521 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 TBX18O95935 607 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 SLC7A1P30825 629 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 MAGEA6P43360 314 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 ALDH6A1Q02252 535 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 PRSS55Q6UWB4 352 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 CASP12Q6UXS9 341 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 CPNE9Q8IYJ1 553 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 PLD6Q8N2A8 252 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 PHTF2Q8N3S3 785 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 CXorf40AQ8TE69 158 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 NAT14Q8WUY8 206 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 PROX1Q92786 737 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 POPDC3Q9HBV1 291 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 PCDH12Q9NPG4 1184 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 SMPD3Q9NY59 655 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 GMPPBQ9Y5P6 360 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 PRR23AA6NEV1 266 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 OR51F1A6NGY5 319 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 CNPP09543 421 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 PABPC1P11940 636 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 TPGS2Q68CL5 300 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 DGCR6LQ9BY27 220 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 KRT84Q9NSB2 600 aa10.68□□□□□ -0.7
LIMCH1-205ENST00000503057 WNK3Q9BYP7 1800 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 FAM234BA2RU67 622 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 PDZK1P1A8MUH7 402 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 SNNO75324 88 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 PFKMP08237 780 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 DHRS4L1P0CG22 281 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 ABRQ12979 859 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 CDKN2AIPNLQ96HQ2 116 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 PPM1MQ96MI6 270 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 DDX28Q9NUL7 540 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 ANGPT4Q9Y264 503 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 KCNE2Q9Y6J6 123 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 AQP12BA6NM10 295 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 MTHFRP42898 656 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 GPR1P46091 355 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 HSPA7P48741 367 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 ERVK-8P63133 956 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 PITX1P78337 314 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 SGCGQ13326 291 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 TMEM63BQ5T3F8 832 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 RBM20Q5T481 1227 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 ERICH5Q6P6B1 374 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 CHST9Q7L1S5 443 aa10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 CTU1Q7Z7A3 348 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-205ENST00000503057 AQP12AQ8IXF9 295 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms