RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 SPA17Q15506 151 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 TSNAXIP1Q2TAA8 658 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 PARP15Q460N3 678 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 FIGNQ5HY92 759 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 HHATQ5VTY9 493 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 HIST2H2BCQ6DN03 193 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 PNCKQ6P2M8 343 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 PHLDB2Q86SQ0 1253 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 CREG2Q8IUH2 290 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 NAGSQ8N159 534 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 UMODL1-AS1Q8N2C9 162 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 AGBL5Q8NDL9 886 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 EPS8L1Q8TE68 723 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 PTCD2Q8WV60 388 aaKnown RBP13.08□□□□□ -0.32
HDAC3-213ENST00000492506 CHMP6Q96FZ7 201 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 ABHD17AQ96GS6 310 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 NSMCE3Q96MG7 304 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 RAB3IPQ96QF0 476 aaPredicted RBP13.08□□□□□ -0.32
HDAC3-213ENST00000492506 TUBGCP5Q96RT8 1024 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 YIPF3Q9GZM5 350 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 VCX3BQ9H321 246 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 WDR26Q9H7D7 661 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 VCX3AQ9NNX9 186 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 LUC7LQ9NQ29 371 aaKnown RBP13.08□□□□□ -0.32
HDAC3-213ENST00000492506 SLC39A1Q9NY26 324 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 TAAR2Q9P1P5 351 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 SAMD15Q9P1V8 674 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 PDP2Q9P2J9 529 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 TMCO1Q9UM00 188 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 LRBAP50851 2863 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 IGHV1OR21-1A0A087WYE8 117 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 J3KR12 359 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 CAPN5O15484 640 aaPredicted RBP13.07□□□□□ -0.32
HDAC3-213ENST00000492506 CYP1A1P04798 512 aaPredicted RBP13.07□□□□□ -0.32
HDAC3-213ENST00000492506 CEACAM5P06731 702 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 LINGO3P0C6S8 592 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 EEF1GP26641 437 aaKnown RBP13.07□□□□□ -0.32
HDAC3-213ENST00000492506 AK4P27144 223 aaPredicted RBP13.07□□□□□ -0.32
HDAC3-213ENST00000492506 CSNK1DP48730 415 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 MXRA7P84157 204 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 RAPGEF1Q13905 1077 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 MIIPQ5JXC2 388 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 ANKS6Q68DC2 871 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 DPPA4Q7L190 304 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 TIPARPQ7Z3E1 657 aaKnown RBP13.07□□□□□ -0.32
HDAC3-213ENST00000492506 RNF10Q8N5U6 811 aaKnown RBP13.07□□□□□ -0.32
HDAC3-213ENST00000492506 FBF1Q8TES7 1133 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 FAM172AQ8WUF8 416 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 RTP4Q96DX8 246 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 CAPZA3Q96KX2 299 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 PLEKHG4BQ96PX9 1271 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 ASPSCR1Q9BZE9 553 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 CCDC134Q9H6E4 229 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 LRRC19Q9H756 370 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 CARS2Q9HA77 564 aaKnown RBP13.07□□□□□ -0.32
HDAC3-213ENST00000492506 TRNAU1APQ9NX07 287 aaKnown RBP13.07□□□□□ -0.32
HDAC3-213ENST00000492506 UBA2Q9UBT2 640 aaPredicted RBP13.07□□□□□ -0.32
HDAC3-213ENST00000492506 CIDEBQ9UHD4 219 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 MOSPD1Q9UJG1 213 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 NOCTQ9UK39 431 aaKnown RBP13.07□□□□□ -0.32
HDAC3-213ENST00000492506 ITGB1BP2Q9UKP3 347 aa13.07□□□□□ -0.32
HDAC3-213ENST00000492506 ZNF106Q9H2Y7 1883 aaKnown RBP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 LOC101059948A0A1B0GTJ6 334 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 A0A1W2PQJ5 194 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 MTSS1O43312 755 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 RNF8O76064 485 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 ELFN1P0C7U0 828 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 PRKAR1AP10644 381 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 MYCLP1P12525 358 aaPredicted RBP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 NQO1P15559 274 aaKnown RBP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 CHRNB2P17787 502 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 DRD4P21917 467 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 CSTF2P33240 577 aaKnown RBP eCLIP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 RFC1P35251 1148 aaPredicted RBP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 MTIF2P46199 727 aaKnown RBP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 CDC20Q12834 499 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 PTP4A2Q12974 167 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 MAN2A1Q16706 1144 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 DCAF12Q5T6F0 453 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 KLHDC7AQ5VTJ3 777 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 SLFN11Q7Z7L1 901 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 LCA5Q86VQ0 697 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 HOOK3Q86VS8 718 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 GSPT2Q8IYD1 628 aaKnown RBP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 SLC20A1Q8WUM9 679 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 CPLX3Q8WVH0 158 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 RBM41Q96IZ5 413 aaKnown RBP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 COQ10AQ96MF6 247 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 ZNF570Q96NI8 536 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 LRRC1Q9BTT6 524 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 TEX101Q9BY14 249 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 GSDMCQ9BYG8 508 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 FRMD8Q9BZ67 464 aaPredicted RBP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 STMN4Q9H169 189 aaPredicted RBP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 PPANQ9NQ55 473 aaKnown RBP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 CTTNBP2NLQ9P2B4 639 aa13.06□□□□□ -0.32
HDAC3-213ENST00000492506 REXO2Q9Y3B8 237 aaKnown RBP13.06□□□□□ -0.32
HDAC3-213ENST00000492506 TNRC6AQ8NDV7 1962 aaKnown RBP13.05□□□□□ -0.32
HDAC3-213ENST00000492506 PRR19A6NJB7 356 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms