RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 LILRB3O75022 631 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 SIX3O95343 332 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-212ENST00000477970 URODP06132 367 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 PKNOX1P55347 436 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 RHOAP61586 193 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 SLC7A9P82251 487 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 SMAD3P84022 425 aaKnown RBP12.11□□□□□ -0.47
PTPRF-212ENST00000477970 TSNQ15631 228 aaKnown RBP12.11□□□□□ -0.47
PTPRF-212ENST00000477970 LPCAT4Q643R3 524 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 METTL2BQ6P1Q9 378 aaKnown RBP12.11□□□□□ -0.47
PTPRF-212ENST00000477970 HTR3DQ70Z44 454 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.11□□□□□ -0.47
PTPRF-212ENST00000477970 TMA16Q96EY4 203 aaKnown RBP12.11□□□□□ -0.47
PTPRF-212ENST00000477970 MYO19Q96H55 970 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 FAM192AQ9GZU8 254 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 DHRS7Q9Y394 339 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 FIS1Q9Y3D6 152 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 DTNAQ9Y4J8 743 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 TRBV5-4A0A0C4DH59 114 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 E7ENX8 843 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 SNAP91O60641 907 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 IRF1P10914 325 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 MZF1P28698 734 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-212ENST00000477970 PCBP2Q15366 365 aaKnown RBP eCLIP12.11□□□□□ -0.47
PTPRF-212ENST00000477970 ARMC12Q5T9G4 340 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 CBARPQ8N350 705 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-212ENST00000477970 MARVELD2Q8N4S9 558 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 ICA1LQ8NDH6 482 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 ZUFSPQ96AP4 578 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 ZNF382Q96SR6 550 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 C2orf49Q9BVC5 232 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-212ENST00000477970 BRINP2Q9C0B6 783 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 SLC52A3Q9NQ40 469 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 SPG21Q9NZD8 308 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 CCDC167Q9P0B6 97 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 POLG2Q9UHN1 485 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 FAM50BQ9Y247 325 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 CFLARO15519 480 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 AQP4P55087 323 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 CDH13P55290 713 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 RHDQ02161 417 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 MED21Q13503 144 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 TMEM240Q5SV17 173 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 RETSATQ6NUM9 610 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 RYBPQ8N488 228 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-212ENST00000477970 CARNMT1Q8N4J0 409 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 OR56A4Q8NGH8 313 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 TRPC4APQ8TEL6 797 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 LRGUKQ96M69 825 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 LYSMD1Q96S90 227 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 MUC13Q9H3R2 512 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 ZNF334Q9HCZ1 680 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-212ENST00000477970 NPEPPSL1A6NEC2 478 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 CDC7O00311 574 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 PRRG1O14668 218 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 EFCAB14O75071 495 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 VCLP18206 1134 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 CSKP41240 450 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 CDKN3Q16667 212 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 PAOXQ6QHF9 649 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 TMEM102Q8N9M5 508 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-212ENST00000477970 KLHL32Q96NJ5 620 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 NSUN5Q96P11 429 aaKnown RBP12.1□□□□□ -0.47
PTPRF-212ENST00000477970 SLC30A3Q99726 388 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 DLGAP2Q9P1A6 1054 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 TNPO3Q9Y5L0 923 aaKnown RBP12.1□□□□□ -0.47
PTPRF-212ENST00000477970 GPR45Q9Y5Y3 372 aa12.1□□□□□ -0.47
PTPRF-212ENST00000477970 MKI67P46013 3256 aaKnown RBP12.1□□□□□ -0.47
PTPRF-212ENST00000477970 A0A0J9YYE9 177 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 BTN3A1O00481 513 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 BAIAP3O94812 1187 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 HSD17B1P14061 328 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 CDKN1CP49918 316 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-212ENST00000477970 FOXA1P55317 472 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 MRPS22P82650 360 aaKnown RBP12.09□□□□□ -0.47
PTPRF-212ENST00000477970 PDCD4Q53EL6 469 aaKnown RBP12.09□□□□□ -0.47
PTPRF-212ENST00000477970 ZRANB3Q5FWF4 1079 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 SPNS2Q8IVW8 549 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 HIPK4Q8NE63 616 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 DCUN1D1Q96GG9 259 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 Q9H521 79 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 LATS2Q9NRM7 1088 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 KLHL42Q9P2K6 505 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 LSM7Q9UK45 103 aaKnown RBP12.09□□□□□ -0.47
PTPRF-212ENST00000477970 E2F3O00716 465 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 PRMT5O14744 637 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-212ENST00000477970 CHEK2O96017 543 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 PPM1AP35813 382 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 HK3P52790 923 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 CREB5Q02930 508 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 C6orf10Q5SRN2 563 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 FAM109BQ6ICB4 259 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-212ENST00000477970 BLOC1S3Q6QNY0 202 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 DEFB128Q7Z7B8 93 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 ADAMTSL2Q86TH1 951 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 GPSM1Q86YR5 675 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 SIDT2Q8NBJ9 832 aaKnown RBP12.09□□□□□ -0.47
PTPRF-212ENST00000477970 EXT2Q93063 718 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 LINGO1Q96FE5 620 aa12.09□□□□□ -0.47
PTPRF-212ENST00000477970 MRPL17Q9NRX2 175 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms