RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 USP7Q93009 1102 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 GLYATL1Q969I3 302 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 AHCYL2Q96HN2 611 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 MRFAP1L1Q96HT8 127 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 PANX2Q96RD6 677 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 OSGEPL1Q9H4B0 414 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 RAD18Q9NS91 495 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 TMEM9Q9P0T7 183 aa15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 NFKBIL1Q9UBC1 381 aaPredicted RBP15.54■□□□□ 0.08
CCDC88B-205ENST00000472524 MACROD2A1Z1Q3 448 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 RCCD1A6NED2 376 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 H7C0C1 242 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 NVLO15381 856 aaKnown RBP15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 MTX2O75431 263 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 IPO7O95373 1038 aaKnown RBP15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 CCL4P13236 92 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 CHRNA4P43681 627 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 ATP5OP48047 213 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 HHEXQ03014 270 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 PPP2R5EQ16537 467 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 CLPPQ16740 277 aaPredicted RBP15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 LINC00303Q3SY05 128 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 CHCHD2P9Q5T1J5 151 aaPredicted RBP15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 ADGRG6Q86SQ4 1221 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 IPMKQ8NFU5 416 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 HTR3CQ8WXA8 447 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 OXNAD1Q96HP4 312 aaPredicted RBP15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 SRPK1Q96SB4 655 aaKnown RBP15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 STN1Q9H668 368 aaKnown RBP15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 C10orf88Q9H8K7 445 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 TRIM39Q9HCM9 518 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 FOXJ2Q9P0K8 574 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 RSPH14Q9UHP6 348 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 ACSL6Q9UKU0 697 aa15.53■□□□□ 0.08
CCDC88B-205ENST00000472524 LOC285095A0A1B0GVY8 99 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 HACD1B0YJ81 288 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 SLC28A2O43868 658 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 CTNNA1P35221 906 aaKnown RBP15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 MAPK9P45984 424 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 LIMK2P53671 638 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 GPLD1P80108 840 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 INSCQ1MX18 579 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 SIRPB2Q5JXA9 342 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 PDPK2PQ6A1A2 396 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 IYDQ6PHW0 289 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 RAD9BQ6WBX8 426 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 BBS12Q6ZW61 710 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 ZFAND4Q86XD8 727 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 TMTC1Q8IUR5 882 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 ACRBPQ8NEB7 543 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 OR4D9Q8NGE8 314 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 OR10G6Q8NH81 332 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 COL26A1Q96A83 441 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 MRGPRX2Q96LB1 330 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 FCRL5Q96RD9 977 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 VAT1Q99536 393 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 HERPUD2Q9BSE4 406 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 PRDM8Q9NQV8 689 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 KLC4Q9NSK0 619 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 DUSP10Q9Y6W6 482 aa15.52■□□□□ 0.08
CCDC88B-205ENST00000472524 COL6A6A6NMZ7 2263 aa15.52■□□□□ 0.07
CCDC88B-205ENST00000472524 PIEZO2Q9H5I5 2752 aa15.52■□□□□ 0.07
CCDC88B-205ENST00000472524 A6NCN8 305 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 C9orf172C9J069 976 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 APOC4-APOC2K7ER74 178 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 HGSO14964 777 aaPredicted RBP15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 DUX1O43812 170 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 APOC2P02655 101 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 THRAP10827 490 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 LIPCP11150 499 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 F3P13726 295 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 SLC2A4P14672 509 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 FECHP22830 423 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 RBL1P28749 1068 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 NFATC3Q12968 1075 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 TRA2AQ13595 282 aaKnown RBP eCLIP15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 KHDC1Q4VXA5 237 aaKnown RBP15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 SNAP47Q5SQN1 464 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 GLT6D1Q7Z4J2 308 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 SLC9B2Q86UD5 537 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 VASH2Q86V25 355 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 LRRTM4Q86VH4 590 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 TTC30BQ8N4P2 665 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 GDAP1Q8TB36 358 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 BLOC1S5Q8TDH9 187 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 SGF29Q96ES7 293 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 PLEKHG4BQ96PX9 1271 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 DPYSL5Q9BPU6 564 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 SARS2Q9NP81 518 aaKnown RBP15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 DNAJC16Q9Y2G8 782 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 REXO2Q9Y3B8 237 aaKnown RBP15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 PCDHA3Q9Y5H8 950 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 ADGRG1Q9Y653 693 aa15.51■□□□□ 0.07
CCDC88B-205ENST00000472524 BOD1L1Q8NFC6 3051 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 GPR89AB7ZAQ6 455 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 BUD23O43709 281 aaKnown RBP15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 GPR89BP0CG08 455 aa15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 FGF3P11487 239 aaPredicted RBP15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 WT1P19544 449 aaPredicted RBP15.5■□□□□ 0.07
CCDC88B-205ENST00000472524 CSTF2P33240 577 aaKnown RBP eCLIP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms